Hb_000162_220

Information

Type -
Description -
Location Contig162: 318631-323182
Sequence    

Annotation

kegg
ID pop:POPTR_0004s17910g
description POPTRDRAFT_818181; nodulin family protein
nr
ID XP_002306177.1
description nodulin family protein [Populus trichocarpa]
swissprot
ID F4I9E1
description Protein NUCLEAR FUSION DEFECTIVE 4 OS=Arabidopsis thaliana GN=NFD4 PE=3 SV=1
trembl
ID B9H180
description Nodulin family protein OS=Populus trichocarpa GN=POPTR_0004s17910g PE=4 SV=1
Gene Ontology
ID GO:0009507
description nodulin family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14593: 318580-322399 , PASA_asmbl_14594: 322400-323057
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000162_220 0.0 - - nodulin family protein [Populus trichocarpa]
2 Hb_000407_070 0.1369711456 - - PREDICTED: probable tyrosine-protein phosphatase At1g05000 isoform X1 [Jatropha curcas]
3 Hb_000390_140 0.1665486515 - - PREDICTED: putative gamma-glutamylcyclotransferase At3g02910 [Jatropha curcas]
4 Hb_000023_290 0.174629789 - - steroid binding protein, putative [Ricinus communis]
5 Hb_000362_180 0.1749623648 - - Pdap1 [Gossypium arboreum]
6 Hb_006117_060 0.1769541126 - - hypothetical protein CARUB_v10024452mg [Capsella rubella]
7 Hb_000072_210 0.177289878 - - PREDICTED: pentatricopeptide repeat-containing protein At5g38730 [Jatropha curcas]
8 Hb_004899_310 0.1799110542 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000975_350 0.1833885399 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
10 Hb_172632_050 0.1837039486 - - PREDICTED: uncharacterized protein LOC105646134 [Jatropha curcas]
11 Hb_001146_020 0.1851103692 - - hypothetical protein CISIN_1g013079mg [Citrus sinensis]
12 Hb_000359_090 0.1878434715 - - PREDICTED: persulfide dioxygenase ETHE1 homolog, mitochondrial-like [Malus domestica]
13 Hb_003442_100 0.1941744431 - - PREDICTED: uncharacterized protein LOC105650128 [Jatropha curcas]
14 Hb_000417_100 0.1953385879 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 12-like [Jatropha curcas]
15 Hb_111985_110 0.1953671742 - - thioredoxin H-type 3 [Hevea brasiliensis]
16 Hb_000061_120 0.1988051103 - - PREDICTED: dnaJ homolog subfamily C member 16 [Jatropha curcas]
17 Hb_000923_090 0.2019504023 - - -
18 Hb_001146_010 0.2055286153 - - cystathionine gamma-synthase, putative [Ricinus communis]
19 Hb_009898_040 0.2067641039 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002344_130 0.2072891865 - - PREDICTED: copper transporter 5 [Jatropha curcas]

Gene co-expression network

sample Hb_000162_220 Hb_000162_220 Hb_000407_070 Hb_000407_070 Hb_000162_220--Hb_000407_070 Hb_000390_140 Hb_000390_140 Hb_000162_220--Hb_000390_140 Hb_000023_290 Hb_000023_290 Hb_000162_220--Hb_000023_290 Hb_000362_180 Hb_000362_180 Hb_000162_220--Hb_000362_180 Hb_006117_060 Hb_006117_060 Hb_000162_220--Hb_006117_060 Hb_000072_210 Hb_000072_210 Hb_000162_220--Hb_000072_210 Hb_111985_110 Hb_111985_110 Hb_000407_070--Hb_111985_110 Hb_012305_130 Hb_012305_130 Hb_000407_070--Hb_012305_130 Hb_021409_080 Hb_021409_080 Hb_000407_070--Hb_021409_080 Hb_002301_160 Hb_002301_160 Hb_000407_070--Hb_002301_160 Hb_004627_030 Hb_004627_030 Hb_000407_070--Hb_004627_030 Hb_000009_290 Hb_000009_290 Hb_000407_070--Hb_000009_290 Hb_000923_090 Hb_000923_090 Hb_000390_140--Hb_000923_090 Hb_008695_050 Hb_008695_050 Hb_000390_140--Hb_008695_050 Hb_000390_140--Hb_000072_210 Hb_002609_160 Hb_002609_160 Hb_000390_140--Hb_002609_160 Hb_002636_080 Hb_002636_080 Hb_000390_140--Hb_002636_080 Hb_004734_040 Hb_004734_040 Hb_000390_140--Hb_004734_040 Hb_002133_020 Hb_002133_020 Hb_000023_290--Hb_002133_020 Hb_000016_060 Hb_000016_060 Hb_000023_290--Hb_000016_060 Hb_004176_070 Hb_004176_070 Hb_000023_290--Hb_004176_070 Hb_000733_080 Hb_000733_080 Hb_000023_290--Hb_000733_080 Hb_000359_090 Hb_000359_090 Hb_000023_290--Hb_000359_090 Hb_001747_030 Hb_001747_030 Hb_000023_290--Hb_001747_030 Hb_000362_180--Hb_004176_070 Hb_059480_010 Hb_059480_010 Hb_000362_180--Hb_059480_010 Hb_000115_080 Hb_000115_080 Hb_000362_180--Hb_000115_080 Hb_000510_300 Hb_000510_300 Hb_000362_180--Hb_000510_300 Hb_004032_030 Hb_004032_030 Hb_000362_180--Hb_004032_030 Hb_124373_010 Hb_124373_010 Hb_000362_180--Hb_124373_010 Hb_001396_110 Hb_001396_110 Hb_006117_060--Hb_001396_110 Hb_001911_040 Hb_001911_040 Hb_006117_060--Hb_001911_040 Hb_003567_030 Hb_003567_030 Hb_006117_060--Hb_003567_030 Hb_006643_020 Hb_006643_020 Hb_006117_060--Hb_006643_020 Hb_000045_300 Hb_000045_300 Hb_006117_060--Hb_000045_300 Hb_001189_040 Hb_001189_040 Hb_006117_060--Hb_001189_040 Hb_010560_030 Hb_010560_030 Hb_000072_210--Hb_010560_030 Hb_000327_380 Hb_000327_380 Hb_000072_210--Hb_000327_380 Hb_000072_210--Hb_000923_090 Hb_004052_050 Hb_004052_050 Hb_000072_210--Hb_004052_050 Hb_001123_210 Hb_001123_210 Hb_000072_210--Hb_001123_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.03991 11.3976 4.68936 24.7051 1.45276 3.35657
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.6531 11.107 4.20092 5.97137 3.56429

CAGE analysis