Hb_000426_030

Information

Type -
Description -
Location Contig426: 55912-63940
Sequence    

Annotation

kegg
ID pop:POPTR_0011s06860g
description POPTRDRAFT_568667; hypothetical protein
nr
ID XP_012091833.1
description PREDICTED: protein STICHEL-like 3 isoform X2 [Jatropha curcas]
swissprot
ID F4JRP0
description Protein STICHEL-like 3 OS=Arabidopsis thaliana GN=At4g18820 PE=3 SV=1
trembl
ID A0A067JBF9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21612 PE=4 SV=1
Gene Ontology
ID GO:0009360
description protein stichel-like 3 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42029: 56055-56208 , PASA_asmbl_42030: 56293-56455 , PASA_asmbl_42031: 56483-56718 , PASA_asmbl_42033: 58088-62038 , PASA_asmbl_42034: 62057-63889
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000426_030 0.0 - - PREDICTED: protein STICHEL-like 3 isoform X2 [Jatropha curcas]
2 Hb_000503_010 0.1506764132 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-3b [Jatropha curcas]
3 Hb_002639_100 0.1608365552 - - dehydrin [Hevea brasiliensis]
4 Hb_062416_010 0.169676707 - - PREDICTED: UPF0202 protein At1g10490 [Jatropha curcas]
5 Hb_001189_110 0.1721067303 - - NAC transcription factor 066 [Jatropha curcas]
6 Hb_000270_350 0.1736492487 transcription factor TF Family: MYB-related PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
7 Hb_000676_040 0.1814437901 - - hypothetical protein POPTR_0007s13320g [Populus trichocarpa]
8 Hb_000363_370 0.1832633535 - - PREDICTED: putative BPI/LBP family protein At1g04970 [Jatropha curcas]
9 Hb_037767_010 0.1845838792 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
10 Hb_001433_140 0.1849547012 - - PREDICTED: phospholipase D p1 [Jatropha curcas]
11 Hb_003747_210 0.185195706 - - PREDICTED: uncharacterized protein LOC105630240 [Jatropha curcas]
12 Hb_162150_010 0.1861434803 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000170_240 0.1862490717 - - PREDICTED: auxilin-related protein 1 [Jatropha curcas]
14 Hb_000302_260 0.1862886208 - - hypothetical protein [Bruguiera gymnorhiza]
15 Hb_006198_020 0.1905113345 - - PREDICTED: uncharacterized protein LOC105644416 [Jatropha curcas]
16 Hb_014819_010 0.1922351848 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001818_060 0.1933865707 - - PREDICTED: cysteine proteinase inhibitor 5-like [Jatropha curcas]
18 Hb_063480_020 0.197091656 - - unnamed protein product [Vitis vinifera]
19 Hb_030116_010 0.1981253841 - - F-box protein, atfbl3, putative [Ricinus communis]
20 Hb_008511_100 0.1983832618 - - hypothetical protein POPTR_0009s11860g [Populus trichocarpa]

Gene co-expression network

sample Hb_000426_030 Hb_000426_030 Hb_000503_010 Hb_000503_010 Hb_000426_030--Hb_000503_010 Hb_002639_100 Hb_002639_100 Hb_000426_030--Hb_002639_100 Hb_062416_010 Hb_062416_010 Hb_000426_030--Hb_062416_010 Hb_001189_110 Hb_001189_110 Hb_000426_030--Hb_001189_110 Hb_000270_350 Hb_000270_350 Hb_000426_030--Hb_000270_350 Hb_000676_040 Hb_000676_040 Hb_000426_030--Hb_000676_040 Hb_000302_260 Hb_000302_260 Hb_000503_010--Hb_000302_260 Hb_014068_050 Hb_014068_050 Hb_000503_010--Hb_014068_050 Hb_000111_180 Hb_000111_180 Hb_000503_010--Hb_000111_180 Hb_000170_240 Hb_000170_240 Hb_000503_010--Hb_000170_240 Hb_028487_020 Hb_028487_020 Hb_000503_010--Hb_028487_020 Hb_006935_010 Hb_006935_010 Hb_002639_100--Hb_006935_010 Hb_002053_130 Hb_002053_130 Hb_002639_100--Hb_002053_130 Hb_012107_010 Hb_012107_010 Hb_002639_100--Hb_012107_010 Hb_002572_050 Hb_002572_050 Hb_002639_100--Hb_002572_050 Hb_000038_040 Hb_000038_040 Hb_002639_100--Hb_000038_040 Hb_003747_210 Hb_003747_210 Hb_002639_100--Hb_003747_210 Hb_000631_120 Hb_000631_120 Hb_062416_010--Hb_000631_120 Hb_000059_020 Hb_000059_020 Hb_062416_010--Hb_000059_020 Hb_002524_020 Hb_002524_020 Hb_062416_010--Hb_002524_020 Hb_008948_140 Hb_008948_140 Hb_062416_010--Hb_008948_140 Hb_007765_030 Hb_007765_030 Hb_062416_010--Hb_007765_030 Hb_001259_120 Hb_001259_120 Hb_062416_010--Hb_001259_120 Hb_003442_100 Hb_003442_100 Hb_001189_110--Hb_003442_100 Hb_006643_020 Hb_006643_020 Hb_001189_110--Hb_006643_020 Hb_000975_350 Hb_000975_350 Hb_001189_110--Hb_000975_350 Hb_001189_110--Hb_000302_260 Hb_002042_130 Hb_002042_130 Hb_001189_110--Hb_002042_130 Hb_000270_350--Hb_002524_020 Hb_002781_010 Hb_002781_010 Hb_000270_350--Hb_002781_010 Hb_000270_350--Hb_062416_010 Hb_001268_310 Hb_001268_310 Hb_000270_350--Hb_001268_310 Hb_001675_010 Hb_001675_010 Hb_000270_350--Hb_001675_010 Hb_003544_070 Hb_003544_070 Hb_000270_350--Hb_003544_070 Hb_000676_040--Hb_002524_020 Hb_000270_230 Hb_000270_230 Hb_000676_040--Hb_000270_230 Hb_000371_060 Hb_000371_060 Hb_000676_040--Hb_000371_060 Hb_001257_100 Hb_001257_100 Hb_000676_040--Hb_001257_100 Hb_008667_060 Hb_008667_060 Hb_000676_040--Hb_008667_060 Hb_000059_130 Hb_000059_130 Hb_000676_040--Hb_000059_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.83397 11.483 2.41032 6.04494 0.376803 4.69792
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.39401 3.82828 1.1964 4.677 1.10552

CAGE analysis