Hb_000126_110

Information

Type -
Description -
Location Contig126: 265599-279197
Sequence    

Annotation

kegg
ID pop:POPTR_0011s06740g
description POPTRDRAFT_1093887; hypothetical protein
nr
ID XP_011009654.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RFK1 isoform X3 [Populus euphratica]
swissprot
ID Q9ZP16
description Cysteine-rich receptor-like protein kinase 11 OS=Arabidopsis thaliana GN=CRK11 PE=2 SV=2
trembl
ID B9I1G1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s06740g PE=4 SV=1
Gene Ontology
ID GO:0004715
description receptor-like kinase in flowers

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07940: 270041-276418
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000126_110 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RFK1 isoform X3 [Populus euphratica]
2 Hb_006446_010 0.1383460767 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_007904_130 0.1831316563 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
4 Hb_001103_020 0.1839859955 - - PREDICTED: protein NRT1/ PTR FAMILY 5.10-like [Jatropha curcas]
5 Hb_009193_100 0.1849784188 - - hypothetical protein JCGZ_15709 [Jatropha curcas]
6 Hb_001189_110 0.1850215771 - - NAC transcription factor 066 [Jatropha curcas]
7 Hb_011512_130 0.1906877003 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g33170 [Jatropha curcas]
8 Hb_005188_030 0.1909440655 - - amino acid transporter, putative [Ricinus communis]
9 Hb_008066_070 0.1910358217 transcription factor TF Family: ERF AP2/ERF super family protein [Hevea brasiliensis]
10 Hb_003327_070 0.193344486 - - PREDICTED: UDP-glycosyltransferase 73B4-like [Jatropha curcas]
11 Hb_000152_320 0.1963663096 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000402_190 0.1999798508 - - PREDICTED: F-box protein At1g70590 [Jatropha curcas]
13 Hb_007919_020 0.2013879842 - - electron transporter, putative [Ricinus communis]
14 Hb_092408_010 0.2020252799 transcription factor TF Family: TRAF PREDICTED: BTB/POZ and MATH domain-containing protein 3 isoform X2 [Jatropha curcas]
15 Hb_001049_020 0.2023088085 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003090_100 0.2048571366 - - PREDICTED: uncharacterized protein LOC105646670 [Jatropha curcas]
17 Hb_001623_160 0.2050522189 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g33170 [Jatropha curcas]
18 Hb_002153_030 0.2054877448 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
19 Hb_003442_100 0.206670935 - - PREDICTED: uncharacterized protein LOC105650128 [Jatropha curcas]
20 Hb_010368_060 0.2102823815 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000126_110 Hb_000126_110 Hb_006446_010 Hb_006446_010 Hb_000126_110--Hb_006446_010 Hb_007904_130 Hb_007904_130 Hb_000126_110--Hb_007904_130 Hb_001103_020 Hb_001103_020 Hb_000126_110--Hb_001103_020 Hb_009193_100 Hb_009193_100 Hb_000126_110--Hb_009193_100 Hb_001189_110 Hb_001189_110 Hb_000126_110--Hb_001189_110 Hb_011512_130 Hb_011512_130 Hb_000126_110--Hb_011512_130 Hb_003442_100 Hb_003442_100 Hb_006446_010--Hb_003442_100 Hb_006446_010--Hb_001103_020 Hb_000983_080 Hb_000983_080 Hb_006446_010--Hb_000983_080 Hb_006788_140 Hb_006788_140 Hb_006446_010--Hb_006788_140 Hb_006446_010--Hb_001189_110 Hb_000402_190 Hb_000402_190 Hb_007904_130--Hb_000402_190 Hb_010863_010 Hb_010863_010 Hb_007904_130--Hb_010863_010 Hb_001642_070 Hb_001642_070 Hb_007904_130--Hb_001642_070 Hb_003544_030 Hb_003544_030 Hb_007904_130--Hb_003544_030 Hb_002153_030 Hb_002153_030 Hb_007904_130--Hb_002153_030 Hb_001170_030 Hb_001170_030 Hb_007904_130--Hb_001170_030 Hb_001103_020--Hb_003442_100 Hb_111051_010 Hb_111051_010 Hb_001103_020--Hb_111051_010 Hb_001103_020--Hb_011512_130 Hb_001103_020--Hb_001189_110 Hb_000699_230 Hb_000699_230 Hb_009193_100--Hb_000699_230 Hb_001623_160 Hb_001623_160 Hb_009193_100--Hb_001623_160 Hb_000625_090 Hb_000625_090 Hb_009193_100--Hb_000625_090 Hb_000381_110 Hb_000381_110 Hb_009193_100--Hb_000381_110 Hb_000997_180 Hb_000997_180 Hb_009193_100--Hb_000997_180 Hb_000251_030 Hb_000251_030 Hb_009193_100--Hb_000251_030 Hb_001189_110--Hb_003442_100 Hb_006643_020 Hb_006643_020 Hb_001189_110--Hb_006643_020 Hb_000426_030 Hb_000426_030 Hb_001189_110--Hb_000426_030 Hb_000975_350 Hb_000975_350 Hb_001189_110--Hb_000975_350 Hb_000302_260 Hb_000302_260 Hb_001189_110--Hb_000302_260 Hb_002042_130 Hb_002042_130 Hb_001189_110--Hb_002042_130 Hb_005550_010 Hb_005550_010 Hb_011512_130--Hb_005550_010 Hb_008066_070 Hb_008066_070 Hb_011512_130--Hb_008066_070 Hb_002631_200 Hb_002631_200 Hb_011512_130--Hb_002631_200 Hb_002217_220 Hb_002217_220 Hb_011512_130--Hb_002217_220 Hb_005433_060 Hb_005433_060 Hb_011512_130--Hb_005433_060 Hb_008221_170 Hb_008221_170 Hb_011512_130--Hb_008221_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.349692 0.77768 0.277908 0.742179 0.0761955 0.153272
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.357451 0.159402 0.791444 0.88054 0.0602031

CAGE analysis