Hb_001568_110

Information

Type -
Description -
Location Contig1568: 114079-125028
Sequence    

Annotation

kegg
ID gmx:100816285
description probable receptor-like protein kinase At1g67000-like
nr
ID CDY12598.1
description BnaA02g12660D [Brassica napus]
swissprot
ID Q3ECH2
description Probable receptor-like protein kinase At1g67000 OS=Arabidopsis thaliana GN=At1g67000 PE=2 SV=2
trembl
ID M4EYZ8
description Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra034041 PE=4 SV=1
Gene Ontology
ID GO:0016301
description probable receptor-like protein kinase at1g67000

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001568_110 0.0 - - BnaA02g12660D [Brassica napus]
2 Hb_126103_010 0.2415213968 - - Phosphoprotein phosphatase [Theobroma cacao]
3 Hb_005736_070 0.248384058 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 1 [Jatropha curcas]
4 Hb_067034_030 0.253174873 - - ATP-binding cassette transporter, putative [Ricinus communis]
5 Hb_002686_400 0.2541208295 - - hypothetical protein POPTR_0019s04500g [Populus trichocarpa]
6 Hb_001825_020 0.2584293919 - - nucleic acid binding protein, putative [Ricinus communis]
7 Hb_000685_060 0.2601017789 - - ring finger protein, putative [Ricinus communis]
8 Hb_000215_340 0.2667465228 - - gamma glutamyl transpeptidases, putative [Ricinus communis]
9 Hb_007042_010 0.270218778 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
10 Hb_011310_200 0.2707306106 - - grr1, plant, putative [Ricinus communis]
11 Hb_004195_190 0.2712707465 - - WD-repeat protein, putative [Ricinus communis]
12 Hb_000866_370 0.2734885427 - - synaptotagmin, putative [Ricinus communis]
13 Hb_006738_060 0.2738320851 - - ATP binding protein, putative [Ricinus communis]
14 Hb_001879_050 0.2757100953 - - Disease resistance protein RFL1, putative [Ricinus communis]
15 Hb_004970_130 0.2787615111 - - PREDICTED: uncharacterized protein LOC105633891 [Jatropha curcas]
16 Hb_136660_010 0.2794858863 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_048653_020 0.2795594401 - - ankyrin repeat-containing protein, putative [Ricinus communis]
18 Hb_003371_140 0.2797173431 - - hypothetical protein POPTR_0001s23540g, partial [Populus trichocarpa]
19 Hb_117895_010 0.2799266641 - - hypothetical protein JCGZ_17178 [Jatropha curcas]
20 Hb_008616_060 0.2804933472 - - syntaxin, putative [Ricinus communis]

Gene co-expression network

sample Hb_001568_110 Hb_001568_110 Hb_126103_010 Hb_126103_010 Hb_001568_110--Hb_126103_010 Hb_005736_070 Hb_005736_070 Hb_001568_110--Hb_005736_070 Hb_067034_030 Hb_067034_030 Hb_001568_110--Hb_067034_030 Hb_002686_400 Hb_002686_400 Hb_001568_110--Hb_002686_400 Hb_001825_020 Hb_001825_020 Hb_001568_110--Hb_001825_020 Hb_000685_060 Hb_000685_060 Hb_001568_110--Hb_000685_060 Hb_003371_140 Hb_003371_140 Hb_126103_010--Hb_003371_140 Hb_147873_010 Hb_147873_010 Hb_126103_010--Hb_147873_010 Hb_001230_020 Hb_001230_020 Hb_126103_010--Hb_001230_020 Hb_002078_090 Hb_002078_090 Hb_126103_010--Hb_002078_090 Hb_001863_450 Hb_001863_450 Hb_126103_010--Hb_001863_450 Hb_136660_010 Hb_136660_010 Hb_126103_010--Hb_136660_010 Hb_011214_140 Hb_011214_140 Hb_005736_070--Hb_011214_140 Hb_001009_110 Hb_001009_110 Hb_005736_070--Hb_001009_110 Hb_006501_170 Hb_006501_170 Hb_005736_070--Hb_006501_170 Hb_008948_080 Hb_008948_080 Hb_005736_070--Hb_008948_080 Hb_005736_070--Hb_001825_020 Hb_010620_020 Hb_010620_020 Hb_005736_070--Hb_010620_020 Hb_012098_170 Hb_012098_170 Hb_067034_030--Hb_012098_170 Hb_000679_240 Hb_000679_240 Hb_067034_030--Hb_000679_240 Hb_067034_030--Hb_006501_170 Hb_001248_030 Hb_001248_030 Hb_067034_030--Hb_001248_030 Hb_000645_240 Hb_000645_240 Hb_067034_030--Hb_000645_240 Hb_000521_300 Hb_000521_300 Hb_067034_030--Hb_000521_300 Hb_009897_020 Hb_009897_020 Hb_002686_400--Hb_009897_020 Hb_000010_350 Hb_000010_350 Hb_002686_400--Hb_000010_350 Hb_033642_070 Hb_033642_070 Hb_002686_400--Hb_033642_070 Hb_002760_040 Hb_002760_040 Hb_002686_400--Hb_002760_040 Hb_000866_370 Hb_000866_370 Hb_002686_400--Hb_000866_370 Hb_006738_060 Hb_006738_060 Hb_002686_400--Hb_006738_060 Hb_001825_020--Hb_010620_020 Hb_001825_020--Hb_006501_170 Hb_001195_730 Hb_001195_730 Hb_001825_020--Hb_001195_730 Hb_002284_030 Hb_002284_030 Hb_001825_020--Hb_002284_030 Hb_001825_020--Hb_011214_140 Hb_003504_040 Hb_003504_040 Hb_000685_060--Hb_003504_040 Hb_003299_010 Hb_003299_010 Hb_000685_060--Hb_003299_010 Hb_005157_010 Hb_005157_010 Hb_000685_060--Hb_005157_010 Hb_001377_500 Hb_001377_500 Hb_000685_060--Hb_001377_500 Hb_000608_020 Hb_000608_020 Hb_000685_060--Hb_000608_020 Hb_000215_340 Hb_000215_340 Hb_000685_060--Hb_000215_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00602393 0.129068 0 0.0166869 0.00912124 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.011042 0 0.0166855 0.0516305 0.0186169

CAGE analysis