Hb_001062_020

Information

Type -
Description -
Location Contig1062: 26692-33423
Sequence    

Annotation

kegg
ID pxb:103962405
description uncharacterized LOC103962405
nr
ID XP_009373381.1
description PREDICTED: uncharacterized protein LOC103962405 [Pyrus x bretschneideri]
swissprot
ID Q09575
description Uncharacterized protein K02A2.6 OS=Caenorhabditis elegans GN=K02A2.6 PE=3 SV=1
trembl
ID A0A061FXV3
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_013681 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001062_020 0.0 - - PREDICTED: uncharacterized protein LOC103962405 [Pyrus x bretschneideri]
2 Hb_115376_010 0.1724214459 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
3 Hb_002791_020 0.2454842938 - - hypothetical protein AALP_AA5G271700 [Arabis alpina]
4 Hb_011663_020 0.2768038507 - - Putative retrotransposon protein, identical [Solanum demissum]
5 Hb_057451_040 0.2775183236 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_001206_010 0.2858409965 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
7 Hb_063405_020 0.2926167999 - - PREDICTED: uncharacterized protein LOC105155919 [Sesamum indicum]
8 Hb_115656_010 0.2962314595 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
9 Hb_131102_010 0.2997282141 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
10 Hb_024411_010 0.3033952028 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
11 Hb_007790_040 0.3038184357 - - PREDICTED: uncharacterized protein LOC104417177 [Eucalyptus grandis]
12 Hb_019656_010 0.3046694765 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
13 Hb_043708_010 0.3059228107 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
14 Hb_008326_010 0.3073661347 - - putative polyprotein [Oryza sativa Japonica Group]
15 Hb_004212_040 0.3234253011 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
16 Hb_003944_020 0.3279796943 - - PREDICTED: uncharacterized protein LOC105110580 [Populus euphratica]
17 Hb_001282_030 0.3280707148 - - hypothetical protein JCGZ_01613 [Jatropha curcas]
18 Hb_000307_230 0.3307603439 - - -
19 Hb_000268_100 0.3326191219 - - -
20 Hb_008008_020 0.334372641 - - -

Gene co-expression network

sample Hb_001062_020 Hb_001062_020 Hb_115376_010 Hb_115376_010 Hb_001062_020--Hb_115376_010 Hb_002791_020 Hb_002791_020 Hb_001062_020--Hb_002791_020 Hb_011663_020 Hb_011663_020 Hb_001062_020--Hb_011663_020 Hb_057451_040 Hb_057451_040 Hb_001062_020--Hb_057451_040 Hb_001206_010 Hb_001206_010 Hb_001062_020--Hb_001206_010 Hb_063405_020 Hb_063405_020 Hb_001062_020--Hb_063405_020 Hb_007790_040 Hb_007790_040 Hb_115376_010--Hb_007790_040 Hb_008326_010 Hb_008326_010 Hb_115376_010--Hb_008326_010 Hb_000307_230 Hb_000307_230 Hb_115376_010--Hb_000307_230 Hb_115376_010--Hb_002791_020 Hb_002599_040 Hb_002599_040 Hb_115376_010--Hb_002599_040 Hb_008803_040 Hb_008803_040 Hb_002791_020--Hb_008803_040 Hb_043708_010 Hb_043708_010 Hb_002791_020--Hb_043708_010 Hb_170156_010 Hb_170156_010 Hb_002791_020--Hb_170156_010 Hb_001188_120 Hb_001188_120 Hb_002791_020--Hb_001188_120 Hb_006569_050 Hb_006569_050 Hb_002791_020--Hb_006569_050 Hb_004650_060 Hb_004650_060 Hb_002791_020--Hb_004650_060 Hb_159198_010 Hb_159198_010 Hb_011663_020--Hb_159198_010 Hb_000840_040 Hb_000840_040 Hb_011663_020--Hb_000840_040 Hb_011663_020--Hb_063405_020 Hb_082987_010 Hb_082987_010 Hb_011663_020--Hb_082987_010 Hb_003185_100 Hb_003185_100 Hb_011663_020--Hb_003185_100 Hb_000268_100 Hb_000268_100 Hb_057451_040--Hb_000268_100 Hb_011478_010 Hb_011478_010 Hb_057451_040--Hb_011478_010 Hb_003711_030 Hb_003711_030 Hb_057451_040--Hb_003711_030 Hb_115656_010 Hb_115656_010 Hb_057451_040--Hb_115656_010 Hb_004212_040 Hb_004212_040 Hb_057451_040--Hb_004212_040 Hb_002025_090 Hb_002025_090 Hb_057451_040--Hb_002025_090 Hb_014879_010 Hb_014879_010 Hb_001206_010--Hb_014879_010 Hb_000172_130 Hb_000172_130 Hb_001206_010--Hb_000172_130 Hb_024411_010 Hb_024411_010 Hb_001206_010--Hb_024411_010 Hb_001206_010--Hb_057451_040 Hb_038044_020 Hb_038044_020 Hb_001206_010--Hb_038044_020 Hb_002360_030 Hb_002360_030 Hb_063405_020--Hb_002360_030 Hb_011310_080 Hb_011310_080 Hb_063405_020--Hb_011310_080 Hb_002188_140 Hb_002188_140 Hb_063405_020--Hb_002188_140 Hb_000001_130 Hb_000001_130 Hb_063405_020--Hb_000001_130 Hb_001114_040 Hb_001114_040 Hb_063405_020--Hb_001114_040 Hb_007054_050 Hb_007054_050 Hb_063405_020--Hb_007054_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0155406 0 0 0 0.00582877
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0112312 0.0214899 0.00890839 0.0479391

CAGE analysis