Hb_115376_010

Information

Type -
Description -
Location Contig115376: 45-1697
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa021229mg
description hypothetical protein
nr
ID XP_007213082.1
description hypothetical protein PRUPE_ppa021229mg [Prunus persica]
swissprot
ID P04323
description Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID M5WLY8
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021229mg PE=4 SV=1
Gene Ontology
ID GO:0005634
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_115376_010 0.0 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
2 Hb_001062_020 0.1724214459 - - PREDICTED: uncharacterized protein LOC103962405 [Pyrus x bretschneideri]
3 Hb_007790_040 0.2304368506 - - PREDICTED: uncharacterized protein LOC104417177 [Eucalyptus grandis]
4 Hb_008326_010 0.2457076479 - - putative polyprotein [Oryza sativa Japonica Group]
5 Hb_000307_230 0.2460480065 - - -
6 Hb_002791_020 0.2835261358 - - hypothetical protein AALP_AA5G271700 [Arabis alpina]
7 Hb_002599_040 0.2935660213 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
8 Hb_003406_030 0.3001170501 - - PREDICTED: uncharacterized protein LOC104774100 [Camelina sativa]
9 Hb_082987_010 0.3005936484 - - hypothetical protein CICLE_v10030423mg [Citrus clementina]
10 Hb_106815_010 0.3008927524 - - hypothetical protein, conserved [Eimeria acervulina]
11 Hb_004212_040 0.3091073552 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
12 Hb_010883_130 0.3099165898 - - PREDICTED: pentatricopeptide repeat-containing protein At4g08210 [Jatropha curcas]
13 Hb_007054_050 0.3167036699 - - -
14 Hb_171685_020 0.3200439271 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000764_040 0.3219180156 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
16 Hb_043708_010 0.322355463 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
17 Hb_011986_010 0.3244124854 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
18 Hb_005742_010 0.3246963585 - - hypothetical protein, partial [Pseudomonas fluorescens]
19 Hb_115656_010 0.3251608184 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
20 Hb_077935_010 0.3284764472 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_115376_010 Hb_115376_010 Hb_001062_020 Hb_001062_020 Hb_115376_010--Hb_001062_020 Hb_007790_040 Hb_007790_040 Hb_115376_010--Hb_007790_040 Hb_008326_010 Hb_008326_010 Hb_115376_010--Hb_008326_010 Hb_000307_230 Hb_000307_230 Hb_115376_010--Hb_000307_230 Hb_002791_020 Hb_002791_020 Hb_115376_010--Hb_002791_020 Hb_002599_040 Hb_002599_040 Hb_115376_010--Hb_002599_040 Hb_001062_020--Hb_002791_020 Hb_011663_020 Hb_011663_020 Hb_001062_020--Hb_011663_020 Hb_057451_040 Hb_057451_040 Hb_001062_020--Hb_057451_040 Hb_001206_010 Hb_001206_010 Hb_001062_020--Hb_001206_010 Hb_063405_020 Hb_063405_020 Hb_001062_020--Hb_063405_020 Hb_106815_010 Hb_106815_010 Hb_007790_040--Hb_106815_010 Hb_000191_120 Hb_000191_120 Hb_007790_040--Hb_000191_120 Hb_006157_050 Hb_006157_050 Hb_007790_040--Hb_006157_050 Hb_065943_010 Hb_065943_010 Hb_007790_040--Hb_065943_010 Hb_004078_030 Hb_004078_030 Hb_007790_040--Hb_004078_030 Hb_008326_010--Hb_002599_040 Hb_003005_040 Hb_003005_040 Hb_008326_010--Hb_003005_040 Hb_016748_010 Hb_016748_010 Hb_008326_010--Hb_016748_010 Hb_077935_010 Hb_077935_010 Hb_008326_010--Hb_077935_010 Hb_007054_050 Hb_007054_050 Hb_008326_010--Hb_007054_050 Hb_000307_230--Hb_002599_040 Hb_000764_040 Hb_000764_040 Hb_000307_230--Hb_000764_040 Hb_000307_230--Hb_106815_010 Hb_000614_270 Hb_000614_270 Hb_000307_230--Hb_000614_270 Hb_010883_130 Hb_010883_130 Hb_000307_230--Hb_010883_130 Hb_008803_040 Hb_008803_040 Hb_002791_020--Hb_008803_040 Hb_043708_010 Hb_043708_010 Hb_002791_020--Hb_043708_010 Hb_170156_010 Hb_170156_010 Hb_002791_020--Hb_170156_010 Hb_001188_120 Hb_001188_120 Hb_002791_020--Hb_001188_120 Hb_006569_050 Hb_006569_050 Hb_002791_020--Hb_006569_050 Hb_004650_060 Hb_004650_060 Hb_002791_020--Hb_004650_060 Hb_000060_060 Hb_000060_060 Hb_002599_040--Hb_000060_060 Hb_008730_010 Hb_008730_010 Hb_002599_040--Hb_008730_010 Hb_002599_040--Hb_106815_010 Hb_002599_040--Hb_000614_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0211821 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0229326 0.0431815 0.018293 0.0961854

CAGE analysis