Hb_007790_040

Information

Type -
Description -
Location Contig7790: 39108-43566
Sequence    

Annotation

kegg
ID egr:104417177
description uncharacterized LOC104417177
nr
ID XP_010026793.1
description PREDICTED: uncharacterized protein LOC104417177 [Eucalyptus grandis]
swissprot
ID Q99315
description Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3
trembl
ID Q01KL8
description OSIGBa0147J19.11 protein OS=Oryza sativa GN=OSIGBa0147J19.11 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007790_040 0.0 - - PREDICTED: uncharacterized protein LOC104417177 [Eucalyptus grandis]
2 Hb_106815_010 0.1879361189 - - hypothetical protein, conserved [Eimeria acervulina]
3 Hb_115376_010 0.2304368506 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
4 Hb_000191_120 0.2356644252 - - -
5 Hb_006157_050 0.25350587 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_065943_010 0.2581152734 - - -
7 Hb_004078_030 0.263565254 - - Putative polyprotein, identical [Solanum demissum]
8 Hb_004019_060 0.2635652542 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
9 Hb_008601_020 0.2635652546 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_004989_010 0.2635652628 - - retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa Japonica Group]
11 Hb_017184_010 0.2635659857 - - PREDICTED: uncharacterized protein LOC105778857 [Gossypium raimondii]
12 Hb_001952_080 0.2635662445 - - PREDICTED: uncharacterized protein LOC105042236 isoform X2 [Elaeis guineensis]
13 Hb_039316_010 0.2635663868 - - PREDICTED: uncharacterized protein LOC105771917 [Gossypium raimondii]
14 Hb_113614_010 0.2635664705 - - hypothetical protein VITISV_001308 [Vitis vinifera]
15 Hb_000029_430 0.2635666693 - - PREDICTED: adenylate isopentenyltransferase 5, chloroplastic-like [Jatropha curcas]
16 Hb_181107_010 0.2635677638 - - hypothetical protein, partial [Pseudomonas tolaasii]
17 Hb_001168_090 0.2635691513 - - PREDICTED: uncharacterized protein LOC104246050 [Nicotiana sylvestris]
18 Hb_009577_010 0.263570409 - - -
19 Hb_026405_010 0.2635706882 - - PREDICTED: uncharacterized protein LOC104107896 [Nicotiana tomentosiformis]
20 Hb_089844_010 0.2635720612 - - -

Gene co-expression network

sample Hb_007790_040 Hb_007790_040 Hb_106815_010 Hb_106815_010 Hb_007790_040--Hb_106815_010 Hb_115376_010 Hb_115376_010 Hb_007790_040--Hb_115376_010 Hb_000191_120 Hb_000191_120 Hb_007790_040--Hb_000191_120 Hb_006157_050 Hb_006157_050 Hb_007790_040--Hb_006157_050 Hb_065943_010 Hb_065943_010 Hb_007790_040--Hb_065943_010 Hb_004078_030 Hb_004078_030 Hb_007790_040--Hb_004078_030 Hb_002869_070 Hb_002869_070 Hb_106815_010--Hb_002869_070 Hb_004124_010 Hb_004124_010 Hb_106815_010--Hb_004124_010 Hb_006933_010 Hb_006933_010 Hb_106815_010--Hb_006933_010 Hb_106815_010--Hb_006157_050 Hb_106815_010--Hb_065943_010 Hb_099723_010 Hb_099723_010 Hb_106815_010--Hb_099723_010 Hb_001062_020 Hb_001062_020 Hb_115376_010--Hb_001062_020 Hb_008326_010 Hb_008326_010 Hb_115376_010--Hb_008326_010 Hb_000307_230 Hb_000307_230 Hb_115376_010--Hb_000307_230 Hb_002791_020 Hb_002791_020 Hb_115376_010--Hb_002791_020 Hb_002599_040 Hb_002599_040 Hb_115376_010--Hb_002599_040 Hb_000465_420 Hb_000465_420 Hb_000191_120--Hb_000465_420 Hb_010757_010 Hb_010757_010 Hb_000191_120--Hb_010757_010 Hb_173468_010 Hb_173468_010 Hb_000191_120--Hb_173468_010 Hb_000191_120--Hb_106815_010 Hb_181240_010 Hb_181240_010 Hb_000191_120--Hb_181240_010 Hb_006157_050--Hb_065943_010 Hb_006157_050--Hb_099723_010 Hb_000940_190 Hb_000940_190 Hb_006157_050--Hb_000940_190 Hb_032531_010 Hb_032531_010 Hb_006157_050--Hb_032531_010 Hb_050334_010 Hb_050334_010 Hb_006157_050--Hb_050334_010 Hb_006157_050--Hb_002869_070 Hb_065943_010--Hb_099723_010 Hb_065943_010--Hb_000940_190 Hb_065943_010--Hb_032531_010 Hb_065943_010--Hb_050334_010 Hb_065943_010--Hb_002869_070 Hb_004019_060 Hb_004019_060 Hb_004078_030--Hb_004019_060 Hb_008601_020 Hb_008601_020 Hb_004078_030--Hb_008601_020 Hb_004989_010 Hb_004989_010 Hb_004078_030--Hb_004989_010 Hb_017184_010 Hb_017184_010 Hb_004078_030--Hb_017184_010 Hb_001952_080 Hb_001952_080 Hb_004078_030--Hb_001952_080 Hb_039316_010 Hb_039316_010 Hb_004078_030--Hb_039316_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0038712 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.00839582 0.0483834 0.00332516 0.053986

CAGE analysis