Hb_173468_010

Information

Type -
Description -
Location Contig173468: 18866-20230
Sequence    

Annotation

kegg
ID rcu:RCOM_1057980
description Vacuolar sorting receptor 1 precursor, putative
nr
ID XP_002528694.1
description Vacuolar sorting receptor 1 precursor, putative [Ricinus communis]
swissprot
ID P93026
description Vacuolar-sorting receptor 1 OS=Arabidopsis thaliana GN=VSR1 PE=1 SV=2
trembl
ID B9SRT1
description Vacuolar sorting receptor 1, putative OS=Ricinus communis GN=RCOM_1057980 PE=4 SV=1
Gene Ontology
ID GO:0005509
description vacuolar-sorting receptor 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_173468_010 0.0 - - Vacuolar sorting receptor 1 precursor, putative [Ricinus communis]
2 Hb_000465_420 0.210865535 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105632322 [Jatropha curcas]
3 Hb_000191_120 0.222949269 - - -
4 Hb_012447_010 0.2254150209 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_007790_040 0.2827444007 - - PREDICTED: uncharacterized protein LOC104417177 [Eucalyptus grandis]
6 Hb_010736_030 0.2861283989 - - -
7 Hb_010757_010 0.306333 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
8 Hb_056199_030 0.32723422 - - PREDICTED: purine permease 3-like isoform X2 [Gossypium raimondii]
9 Hb_119504_010 0.3279657937 - - hypothetical protein JCGZ_15304 [Jatropha curcas]
10 Hb_001693_040 0.3299643479 - - -
11 Hb_001987_010 0.3308493412 - - -
12 Hb_001369_430 0.3344025578 - - PREDICTED: uncharacterized protein LOC105648869 [Jatropha curcas]
13 Hb_028998_010 0.3347185169 - - -
14 Hb_000110_110 0.3353156361 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
15 Hb_089844_010 0.3354622125 - - -
16 Hb_026405_010 0.3355683045 - - PREDICTED: uncharacterized protein LOC104107896 [Nicotiana tomentosiformis]
17 Hb_009577_010 0.3355914761 - - -
18 Hb_001168_090 0.3357046927 - - PREDICTED: uncharacterized protein LOC104246050 [Nicotiana sylvestris]
19 Hb_181107_010 0.335853814 - - hypothetical protein, partial [Pseudomonas tolaasii]
20 Hb_000029_430 0.3360048775 - - PREDICTED: adenylate isopentenyltransferase 5, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_173468_010 Hb_173468_010 Hb_000465_420 Hb_000465_420 Hb_173468_010--Hb_000465_420 Hb_000191_120 Hb_000191_120 Hb_173468_010--Hb_000191_120 Hb_012447_010 Hb_012447_010 Hb_173468_010--Hb_012447_010 Hb_007790_040 Hb_007790_040 Hb_173468_010--Hb_007790_040 Hb_010736_030 Hb_010736_030 Hb_173468_010--Hb_010736_030 Hb_010757_010 Hb_010757_010 Hb_173468_010--Hb_010757_010 Hb_000465_420--Hb_000191_120 Hb_000465_420--Hb_010757_010 Hb_000465_420--Hb_012447_010 Hb_000465_420--Hb_007790_040 Hb_056199_030 Hb_056199_030 Hb_000465_420--Hb_056199_030 Hb_000191_120--Hb_010757_010 Hb_000191_120--Hb_007790_040 Hb_106815_010 Hb_106815_010 Hb_000191_120--Hb_106815_010 Hb_181240_010 Hb_181240_010 Hb_000191_120--Hb_181240_010 Hb_012447_010--Hb_056199_030 Hb_012447_010--Hb_007790_040 Hb_007181_020 Hb_007181_020 Hb_012447_010--Hb_007181_020 Hb_119504_010 Hb_119504_010 Hb_012447_010--Hb_119504_010 Hb_007790_040--Hb_106815_010 Hb_115376_010 Hb_115376_010 Hb_007790_040--Hb_115376_010 Hb_006157_050 Hb_006157_050 Hb_007790_040--Hb_006157_050 Hb_065943_010 Hb_065943_010 Hb_007790_040--Hb_065943_010 Hb_004078_030 Hb_004078_030 Hb_007790_040--Hb_004078_030 Hb_001369_430 Hb_001369_430 Hb_010736_030--Hb_001369_430 Hb_028998_010 Hb_028998_010 Hb_010736_030--Hb_028998_010 Hb_000110_110 Hb_000110_110 Hb_010736_030--Hb_000110_110 Hb_089844_010 Hb_089844_010 Hb_010736_030--Hb_089844_010 Hb_026405_010 Hb_026405_010 Hb_010736_030--Hb_026405_010 Hb_009577_010 Hb_009577_010 Hb_010736_030--Hb_009577_010 Hb_010757_010--Hb_181240_010 Hb_010757_010--Hb_007790_040 Hb_008730_010 Hb_008730_010 Hb_010757_010--Hb_008730_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0113704 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0548142 0.256475 0 0.114195

CAGE analysis