Hb_000465_420

Information

Type transcription factor
Description TF Family: PHD
Location Contig465: 392618-394968
Sequence    

Annotation

kegg
ID tcc:TCM_015893
description Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein, putative
nr
ID XP_012070066.1
description PREDICTED: uncharacterized protein LOC105632322 [Jatropha curcas]
swissprot
ID F4IXE7
description Increased DNA methylation 1 OS=Arabidopsis thaliana GN=IDM1 PE=1 SV=1
trembl
ID A0A067KUU9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03458 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000465_420 0.0 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105632322 [Jatropha curcas]
2 Hb_000191_120 0.1973250577 - - -
3 Hb_173468_010 0.210865535 - - Vacuolar sorting receptor 1 precursor, putative [Ricinus communis]
4 Hb_010757_010 0.2893874893 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
5 Hb_012447_010 0.3009037078 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_007790_040 0.3019722678 - - PREDICTED: uncharacterized protein LOC104417177 [Eucalyptus grandis]
7 Hb_056199_030 0.3120328642 - - PREDICTED: purine permease 3-like isoform X2 [Gossypium raimondii]
8 Hb_004324_080 0.3377173482 - - -
9 Hb_000001_100 0.3428875722 - - -
10 Hb_178063_010 0.3495914062 - - hypothetical protein JCGZ_26531 [Jatropha curcas]
11 Hb_106815_010 0.3519926634 - - hypothetical protein, conserved [Eimeria acervulina]
12 Hb_181240_010 0.3531187012 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
13 Hb_003005_040 0.3588371583 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_000834_070 0.3608868408 - - PREDICTED: tankyrase-1 isoform X4 [Jatropha curcas]
15 Hb_014568_020 0.3635869519 - - PREDICTED: GPI mannosyltransferase 2 [Jatropha curcas]
16 Hb_004102_010 0.3641479212 - - F-box family protein [Theobroma cacao]
17 Hb_005687_080 0.372013569 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
18 Hb_000144_040 0.3751130044 - - hypothetical protein POPTR_0006s06790g [Populus trichocarpa]
19 Hb_017184_010 0.3806894353 - - PREDICTED: uncharacterized protein LOC105778857 [Gossypium raimondii]
20 Hb_004989_010 0.3806894937 - - retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa Japonica Group]

Gene co-expression network

sample Hb_000465_420 Hb_000465_420 Hb_000191_120 Hb_000191_120 Hb_000465_420--Hb_000191_120 Hb_173468_010 Hb_173468_010 Hb_000465_420--Hb_173468_010 Hb_010757_010 Hb_010757_010 Hb_000465_420--Hb_010757_010 Hb_012447_010 Hb_012447_010 Hb_000465_420--Hb_012447_010 Hb_007790_040 Hb_007790_040 Hb_000465_420--Hb_007790_040 Hb_056199_030 Hb_056199_030 Hb_000465_420--Hb_056199_030 Hb_000191_120--Hb_010757_010 Hb_000191_120--Hb_173468_010 Hb_000191_120--Hb_007790_040 Hb_106815_010 Hb_106815_010 Hb_000191_120--Hb_106815_010 Hb_181240_010 Hb_181240_010 Hb_000191_120--Hb_181240_010 Hb_173468_010--Hb_012447_010 Hb_173468_010--Hb_007790_040 Hb_010736_030 Hb_010736_030 Hb_173468_010--Hb_010736_030 Hb_173468_010--Hb_010757_010 Hb_010757_010--Hb_181240_010 Hb_010757_010--Hb_007790_040 Hb_008730_010 Hb_008730_010 Hb_010757_010--Hb_008730_010 Hb_012447_010--Hb_056199_030 Hb_012447_010--Hb_007790_040 Hb_007181_020 Hb_007181_020 Hb_012447_010--Hb_007181_020 Hb_119504_010 Hb_119504_010 Hb_012447_010--Hb_119504_010 Hb_007790_040--Hb_106815_010 Hb_115376_010 Hb_115376_010 Hb_007790_040--Hb_115376_010 Hb_006157_050 Hb_006157_050 Hb_007790_040--Hb_006157_050 Hb_065943_010 Hb_065943_010 Hb_007790_040--Hb_065943_010 Hb_004078_030 Hb_004078_030 Hb_007790_040--Hb_004078_030 Hb_000144_040 Hb_000144_040 Hb_056199_030--Hb_000144_040 Hb_000173_440 Hb_000173_440 Hb_056199_030--Hb_000173_440 Hb_056199_030--Hb_007181_020 Hb_010883_130 Hb_010883_130 Hb_056199_030--Hb_010883_130 Hb_001304_120 Hb_001304_120 Hb_056199_030--Hb_001304_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.00951433 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0233336 0.0439127 0 0.0489045

CAGE analysis