Hb_010757_010

Information

Type -
Description -
Location Contig10757: 13245-18768
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa022673mg
description hypothetical protein
nr
ID XP_007213082.1
description hypothetical protein PRUPE_ppa021229mg [Prunus persica]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID M5WLY8
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021229mg PE=4 SV=1
Gene Ontology
ID GO:0005488
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010757_010 0.0 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
2 Hb_000191_120 0.2178367828 - - -
3 Hb_181240_010 0.2775520723 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
4 Hb_000465_420 0.2893874893 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105632322 [Jatropha curcas]
5 Hb_173468_010 0.306333 - - Vacuolar sorting receptor 1 precursor, putative [Ricinus communis]
6 Hb_007790_040 0.3132131148 - - PREDICTED: uncharacterized protein LOC104417177 [Eucalyptus grandis]
7 Hb_008730_010 0.3152101386 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
8 Hb_004324_080 0.3267901635 - - -
9 Hb_019656_010 0.328910736 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
10 Hb_043708_010 0.3349813539 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
11 Hb_167183_010 0.3365288854 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
12 Hb_000521_040 0.3523721956 - - PREDICTED: fatty acyl-CoA reductase 2-like isoform X1 [Populus euphratica]
13 Hb_106815_010 0.3606770117 - - hypothetical protein, conserved [Eimeria acervulina]
14 Hb_000258_340 0.36255218 - - PREDICTED: pentatricopeptide repeat-containing protein At1g26900, mitochondrial [Jatropha curcas]
15 Hb_003005_040 0.3650529251 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_011478_010 0.3687373716 - - -
17 Hb_000172_130 0.370888025 - - hypothetical protein JCGZ_24076 [Jatropha curcas]
18 Hb_000399_010 0.3710716408 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
19 Hb_001062_020 0.3721160616 - - PREDICTED: uncharacterized protein LOC103962405 [Pyrus x bretschneideri]
20 Hb_003711_030 0.3726528232 - - PREDICTED: uncharacterized protein LOC102621950 [Citrus sinensis]

Gene co-expression network

sample Hb_010757_010 Hb_010757_010 Hb_000191_120 Hb_000191_120 Hb_010757_010--Hb_000191_120 Hb_181240_010 Hb_181240_010 Hb_010757_010--Hb_181240_010 Hb_000465_420 Hb_000465_420 Hb_010757_010--Hb_000465_420 Hb_173468_010 Hb_173468_010 Hb_010757_010--Hb_173468_010 Hb_007790_040 Hb_007790_040 Hb_010757_010--Hb_007790_040 Hb_008730_010 Hb_008730_010 Hb_010757_010--Hb_008730_010 Hb_000191_120--Hb_000465_420 Hb_000191_120--Hb_173468_010 Hb_000191_120--Hb_007790_040 Hb_106815_010 Hb_106815_010 Hb_000191_120--Hb_106815_010 Hb_000191_120--Hb_181240_010 Hb_004734_050 Hb_004734_050 Hb_181240_010--Hb_004734_050 Hb_000915_030 Hb_000915_030 Hb_181240_010--Hb_000915_030 Hb_004324_080 Hb_004324_080 Hb_181240_010--Hb_004324_080 Hb_014568_020 Hb_014568_020 Hb_181240_010--Hb_014568_020 Hb_000608_460 Hb_000608_460 Hb_181240_010--Hb_000608_460 Hb_003005_040 Hb_003005_040 Hb_181240_010--Hb_003005_040 Hb_000465_420--Hb_173468_010 Hb_012447_010 Hb_012447_010 Hb_000465_420--Hb_012447_010 Hb_000465_420--Hb_007790_040 Hb_056199_030 Hb_056199_030 Hb_000465_420--Hb_056199_030 Hb_173468_010--Hb_012447_010 Hb_173468_010--Hb_007790_040 Hb_010736_030 Hb_010736_030 Hb_173468_010--Hb_010736_030 Hb_007790_040--Hb_106815_010 Hb_115376_010 Hb_115376_010 Hb_007790_040--Hb_115376_010 Hb_006157_050 Hb_006157_050 Hb_007790_040--Hb_006157_050 Hb_065943_010 Hb_065943_010 Hb_007790_040--Hb_065943_010 Hb_004078_030 Hb_004078_030 Hb_007790_040--Hb_004078_030 Hb_000101_150 Hb_000101_150 Hb_008730_010--Hb_000101_150 Hb_002599_040 Hb_002599_040 Hb_008730_010--Hb_002599_040 Hb_043708_010 Hb_043708_010 Hb_008730_010--Hb_043708_010 Hb_076795_010 Hb_076795_010 Hb_008730_010--Hb_076795_010 Hb_008730_010--Hb_106815_010 Hb_000399_010 Hb_000399_010 Hb_008730_010--Hb_000399_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.00426037
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.00833681 0.0160157 0 0.0178705

CAGE analysis