Hb_106815_010

Information

Type -
Description -
Location Contig106815: 268-2350
Sequence    

Annotation

kegg
ID mus:103975217
description uncharacterized protein LOC103975217
nr
ID CDI81618.1
description hypothetical protein, conserved [Eimeria acervulina]
swissprot
ID P62594
description Beta-lactamase TEM OS=Salmonella typhi GN=bla PE=3 SV=1
trembl
ID U6GQT8
description Uncharacterized protein OS=Eimeria acervulina GN=EAH_00062260 PE=4 SV=1
Gene Ontology
ID GO:0005515
description beta-lactamase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_106815_010 0.0 - - hypothetical protein, conserved [Eimeria acervulina]
2 Hb_002869_070 0.1445711093 - - -
3 Hb_004124_010 0.1504108055 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
4 Hb_006933_010 0.1631054838 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_006157_050 0.1722357632 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_065943_010 0.1777726884 - - -
7 Hb_099723_010 0.1878858743 - - hypothetical protein JCGZ_15340 [Jatropha curcas]
8 Hb_007790_040 0.1879361189 - - PREDICTED: uncharacterized protein LOC104417177 [Eucalyptus grandis]
9 Hb_000940_190 0.1906851836 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
10 Hb_050334_010 0.1967693343 - - -
11 Hb_123396_010 0.1987158454 - - hypothetical protein AMTR_s00510p00011440 [Amborella trichopoda]
12 Hb_000987_110 0.1994775138 - - PREDICTED: uncharacterized protein LOC104902780 [Beta vulgaris subsp. vulgaris]
13 Hb_141425_010 0.1997970169 - - hypothetical protein POPTR_0001s43680g, partial [Populus trichocarpa]
14 Hb_154997_010 0.20279669 - - hypothetical protein POPTR_0001s43680g, partial [Populus trichocarpa]
15 Hb_002473_140 0.2058337023 - - -
16 Hb_000307_230 0.2139930989 - - -
17 Hb_004078_030 0.2222224647 - - Putative polyprotein, identical [Solanum demissum]
18 Hb_004019_060 0.2222322415 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
19 Hb_008601_020 0.2222350304 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_004989_010 0.2222583138 - - retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa Japonica Group]

Gene co-expression network

sample Hb_106815_010 Hb_106815_010 Hb_002869_070 Hb_002869_070 Hb_106815_010--Hb_002869_070 Hb_004124_010 Hb_004124_010 Hb_106815_010--Hb_004124_010 Hb_006933_010 Hb_006933_010 Hb_106815_010--Hb_006933_010 Hb_006157_050 Hb_006157_050 Hb_106815_010--Hb_006157_050 Hb_065943_010 Hb_065943_010 Hb_106815_010--Hb_065943_010 Hb_099723_010 Hb_099723_010 Hb_106815_010--Hb_099723_010 Hb_050334_010 Hb_050334_010 Hb_002869_070--Hb_050334_010 Hb_002869_070--Hb_006933_010 Hb_154997_010 Hb_154997_010 Hb_002869_070--Hb_154997_010 Hb_002869_070--Hb_004124_010 Hb_002473_140 Hb_002473_140 Hb_002869_070--Hb_002473_140 Hb_002869_070--Hb_006157_050 Hb_004124_010--Hb_006933_010 Hb_002495_050 Hb_002495_050 Hb_004124_010--Hb_002495_050 Hb_001124_170 Hb_001124_170 Hb_004124_010--Hb_001124_170 Hb_009268_030 Hb_009268_030 Hb_004124_010--Hb_009268_030 Hb_170973_010 Hb_170973_010 Hb_004124_010--Hb_170973_010 Hb_141425_010 Hb_141425_010 Hb_004124_010--Hb_141425_010 Hb_006933_010--Hb_154997_010 Hb_006933_010--Hb_002495_050 Hb_006933_010--Hb_001124_170 Hb_006933_010--Hb_170973_010 Hb_006157_050--Hb_065943_010 Hb_006157_050--Hb_099723_010 Hb_000940_190 Hb_000940_190 Hb_006157_050--Hb_000940_190 Hb_032531_010 Hb_032531_010 Hb_006157_050--Hb_032531_010 Hb_006157_050--Hb_050334_010 Hb_065943_010--Hb_099723_010 Hb_065943_010--Hb_000940_190 Hb_065943_010--Hb_032531_010 Hb_065943_010--Hb_050334_010 Hb_065943_010--Hb_002869_070 Hb_099723_010--Hb_000940_190 Hb_099723_010--Hb_032531_010 Hb_099723_010--Hb_050334_010 Hb_099723_010--Hb_002869_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0290478 0.325472 0.0464799 0.603692

CAGE analysis