Hb_000940_190

Information

Type -
Description -
Location Contig940: 275543-276002
Sequence    

Annotation

kegg
ID vvi:104878039
description uncharacterized LOC104878039
nr
ID XP_010646031.1
description PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID B9SUW3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0251410 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63150: 265913-278445
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000940_190 0.0 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
2 Hb_099723_010 0.0050510109 - - hypothetical protein JCGZ_15340 [Jatropha curcas]
3 Hb_065943_010 0.0245729737 - - -
4 Hb_006157_050 0.0364051127 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_032531_010 0.0597885837 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_050334_010 0.0948589438 - - -
7 Hb_002869_070 0.1372908728 - - -
8 Hb_004212_040 0.1720845699 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
9 Hb_001519_210 0.1787419743 - - hypothetical protein B456_003G032500 [Gossypium raimondii]
10 Hb_012295_020 0.1841802471 - - PREDICTED: uncharacterized protein LOC104223093 [Nicotiana sylvestris]
11 Hb_002473_140 0.1845817896 - - -
12 Hb_106815_010 0.1906851836 - - hypothetical protein, conserved [Eimeria acervulina]
13 Hb_012071_010 0.1929779629 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
14 Hb_000205_340 0.2106576386 - - PREDICTED: putative B3 domain-containing protein At2g27410 [Jatropha curcas]
15 Hb_002571_090 0.2190124683 - - -
16 Hb_000065_050 0.2299341166 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
17 Hb_004124_010 0.2345739384 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
18 Hb_088410_010 0.23827752 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
19 Hb_006933_010 0.238934277 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_028998_010 0.2444950949 - - -

Gene co-expression network

sample Hb_000940_190 Hb_000940_190 Hb_099723_010 Hb_099723_010 Hb_000940_190--Hb_099723_010 Hb_065943_010 Hb_065943_010 Hb_000940_190--Hb_065943_010 Hb_006157_050 Hb_006157_050 Hb_000940_190--Hb_006157_050 Hb_032531_010 Hb_032531_010 Hb_000940_190--Hb_032531_010 Hb_050334_010 Hb_050334_010 Hb_000940_190--Hb_050334_010 Hb_002869_070 Hb_002869_070 Hb_000940_190--Hb_002869_070 Hb_099723_010--Hb_065943_010 Hb_099723_010--Hb_006157_050 Hb_099723_010--Hb_032531_010 Hb_099723_010--Hb_050334_010 Hb_099723_010--Hb_002869_070 Hb_065943_010--Hb_006157_050 Hb_065943_010--Hb_032531_010 Hb_065943_010--Hb_050334_010 Hb_065943_010--Hb_002869_070 Hb_006157_050--Hb_032531_010 Hb_006157_050--Hb_050334_010 Hb_006157_050--Hb_002869_070 Hb_032531_010--Hb_050334_010 Hb_012295_020 Hb_012295_020 Hb_032531_010--Hb_012295_020 Hb_001519_210 Hb_001519_210 Hb_050334_010--Hb_001519_210 Hb_050334_010--Hb_002869_070 Hb_006933_010 Hb_006933_010 Hb_002869_070--Hb_006933_010 Hb_154997_010 Hb_154997_010 Hb_002869_070--Hb_154997_010 Hb_004124_010 Hb_004124_010 Hb_002869_070--Hb_004124_010 Hb_002473_140 Hb_002473_140 Hb_002869_070--Hb_002473_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.261023 0.070814 0.286443

CAGE analysis