Hb_076795_010

Information

Type -
Description -
Location Contig76795: 3197-3841
Sequence    

Annotation

kegg
ID pop:POPTR_0001s07680g
description hypothetical protein
nr
ID XP_006368679.1
description hypothetical protein POPTR_0001s07680g, partial [Populus trichocarpa]
swissprot
ID Q9FMS6
description Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana GN=CAF1-11 PE=2 SV=1
trembl
ID U5GNV0
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0001s07680g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_076795_010 0.0 - - hypothetical protein POPTR_0001s07680g, partial [Populus trichocarpa]
2 Hb_000031_350 0.1973602591 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic isoform X2 [Cucumis melo]
3 Hb_012098_190 0.1987329751 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
4 Hb_001188_120 0.2344860036 - - hypothetical protein JCGZ_05575 [Jatropha curcas]
5 Hb_000144_040 0.2528566891 - - hypothetical protein POPTR_0006s06790g [Populus trichocarpa]
6 Hb_172388_010 0.252984573 - - PREDICTED: uncharacterized protein LOC105633410 [Jatropha curcas]
7 Hb_008730_010 0.2574210121 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
8 Hb_000101_150 0.2631998277 - - -
9 Hb_138585_020 0.2686314964 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001304_120 0.2759201437 transcription factor TF Family: WRKY WRKY protein [Hevea brasiliensis]
11 Hb_005007_040 0.3037163731 - - hypothetical protein VITISV_032357 [Vitis vinifera]
12 Hb_002047_020 0.3078159724 - - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis]
13 Hb_032531_010 0.3083042817 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_005511_090 0.3092363718 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 C isoform X1 [Jatropha curcas]
15 Hb_005439_010 0.3104051065 - - PREDICTED: putative ribonuclease H protein At1g65750 [Beta vulgaris subsp. vulgaris]
16 Hb_032496_010 0.3125847744 - - hypothetical protein POPTR_0012s10850g [Populus trichocarpa]
17 Hb_012753_010 0.3135220821 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
18 Hb_181026_010 0.3160723248 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
19 Hb_002791_020 0.3161227347 - - hypothetical protein AALP_AA5G271700 [Arabis alpina]
20 Hb_012295_020 0.3171038975 - - PREDICTED: uncharacterized protein LOC104223093 [Nicotiana sylvestris]

Gene co-expression network

sample Hb_076795_010 Hb_076795_010 Hb_000031_350 Hb_000031_350 Hb_076795_010--Hb_000031_350 Hb_012098_190 Hb_012098_190 Hb_076795_010--Hb_012098_190 Hb_001188_120 Hb_001188_120 Hb_076795_010--Hb_001188_120 Hb_000144_040 Hb_000144_040 Hb_076795_010--Hb_000144_040 Hb_172388_010 Hb_172388_010 Hb_076795_010--Hb_172388_010 Hb_008730_010 Hb_008730_010 Hb_076795_010--Hb_008730_010 Hb_000031_350--Hb_012098_190 Hb_085083_020 Hb_085083_020 Hb_000031_350--Hb_085083_020 Hb_005439_010 Hb_005439_010 Hb_000031_350--Hb_005439_010 Hb_000101_150 Hb_000101_150 Hb_000031_350--Hb_000101_150 Hb_000031_350--Hb_001188_120 Hb_002360_020 Hb_002360_020 Hb_012098_190--Hb_002360_020 Hb_012098_190--Hb_001188_120 Hb_012098_190--Hb_000144_040 Hb_181026_010 Hb_181026_010 Hb_012098_190--Hb_181026_010 Hb_012753_010 Hb_012753_010 Hb_001188_120--Hb_012753_010 Hb_003186_040 Hb_003186_040 Hb_001188_120--Hb_003186_040 Hb_002791_020 Hb_002791_020 Hb_001188_120--Hb_002791_020 Hb_001188_120--Hb_085083_020 Hb_185058_020 Hb_185058_020 Hb_001188_120--Hb_185058_020 Hb_001304_120 Hb_001304_120 Hb_000144_040--Hb_001304_120 Hb_001045_110 Hb_001045_110 Hb_000144_040--Hb_001045_110 Hb_000144_040--Hb_001188_120 Hb_056199_030 Hb_056199_030 Hb_000144_040--Hb_056199_030 Hb_172388_010--Hb_012098_190 Hb_005803_040 Hb_005803_040 Hb_172388_010--Hb_005803_040 Hb_138585_020 Hb_138585_020 Hb_172388_010--Hb_138585_020 Hb_172388_010--Hb_008730_010 Hb_000307_230 Hb_000307_230 Hb_172388_010--Hb_000307_230 Hb_008730_010--Hb_000101_150 Hb_002599_040 Hb_002599_040 Hb_008730_010--Hb_002599_040 Hb_043708_010 Hb_043708_010 Hb_008730_010--Hb_043708_010 Hb_106815_010 Hb_106815_010 Hb_008730_010--Hb_106815_010 Hb_000399_010 Hb_000399_010 Hb_008730_010--Hb_000399_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0496264 0 0.0930194 0 0.294674 0.0546692
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0714002 1.00911 0.52495 1.11753

CAGE analysis