Hb_181026_010

Information

Type -
Description -
Location Contig181026: 334-672
Sequence    

Annotation

kegg
ID rcu:RCOM_0851830
description Auxin-induced protein 5NG4, putative
nr
ID XP_002517375.1
description Auxin-induced protein 5NG4, putative [Ricinus communis]
swissprot
ID F4KHA8
description WAT1-related protein At5g40230 OS=Arabidopsis thaliana GN=At5g40230 PE=3 SV=1
trembl
ID B9RUD0
description Auxin-induced protein 5NG4, putative OS=Ricinus communis GN=RCOM_0851830 PE=4 SV=1
Gene Ontology
ID GO:0016021
description wat1-related protein at3g28050-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_181026_010 0.0 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
2 Hb_000460_070 0.2058068984 - - luminal binding protein [Gossypium hirsutum]
3 Hb_006816_470 0.214348583 - - PREDICTED: uncharacterized protein LOC105647469 isoform X1 [Jatropha curcas]
4 Hb_011386_020 0.2241667353 - - unnamed protein product [Vitis vinifera]
5 Hb_005167_020 0.2273692924 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
6 Hb_004650_060 0.2292947725 - - putative retrotransposon protein [Phyllostachys edulis]
7 Hb_004339_030 0.231192519 - - PREDICTED: 7-methylguanosine phosphate-specific 5'-nucleotidase A isoform X2 [Jatropha curcas]
8 Hb_008698_010 0.2319563606 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Jatropha curcas]
9 Hb_005282_020 0.233141409 - - hypothetical protein PRUPE_ppa019056mg, partial [Prunus persica]
10 Hb_002875_060 0.2343457882 - - hypothetical protein L484_023461 [Morus notabilis]
11 Hb_000058_080 0.2355244443 - - PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
12 Hb_001142_010 0.2365364622 - - PREDICTED: alcohol dehydrogenase-like 6 [Jatropha curcas]
13 Hb_021313_010 0.2366643092 - - hypothetical protein POPTR_0010s24380g [Populus trichocarpa]
14 Hb_008725_170 0.2388053911 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 11-like [Populus euphratica]
15 Hb_003581_290 0.2389388116 - - PREDICTED: UDP-galactose/UDP-glucose transporter 3 [Fragaria vesca subsp. vesca]
16 Hb_000364_160 0.2390312717 - - PREDICTED: uncharacterized protein LOC105639754 [Jatropha curcas]
17 Hb_003186_040 0.2406780293 - - PREDICTED: protein DENND6A [Jatropha curcas]
18 Hb_000012_160 0.2440002322 - - PREDICTED: uncharacterized protein LOC105638175 isoform X1 [Jatropha curcas]
19 Hb_000381_010 0.2440417348 - - PREDICTED: arogenate dehydratase/prephenate dehydratase 1, chloroplastic-like [Jatropha curcas]
20 Hb_003944_020 0.2468881897 - - PREDICTED: uncharacterized protein LOC105110580 [Populus euphratica]

Gene co-expression network

sample Hb_181026_010 Hb_181026_010 Hb_000460_070 Hb_000460_070 Hb_181026_010--Hb_000460_070 Hb_006816_470 Hb_006816_470 Hb_181026_010--Hb_006816_470 Hb_011386_020 Hb_011386_020 Hb_181026_010--Hb_011386_020 Hb_005167_020 Hb_005167_020 Hb_181026_010--Hb_005167_020 Hb_004650_060 Hb_004650_060 Hb_181026_010--Hb_004650_060 Hb_004339_030 Hb_004339_030 Hb_181026_010--Hb_004339_030 Hb_008698_010 Hb_008698_010 Hb_000460_070--Hb_008698_010 Hb_001229_020 Hb_001229_020 Hb_000460_070--Hb_001229_020 Hb_000683_080 Hb_000683_080 Hb_000460_070--Hb_000683_080 Hb_001621_060 Hb_001621_060 Hb_000460_070--Hb_001621_060 Hb_000189_520 Hb_000189_520 Hb_000460_070--Hb_000189_520 Hb_007054_050 Hb_007054_050 Hb_000460_070--Hb_007054_050 Hb_008725_170 Hb_008725_170 Hb_006816_470--Hb_008725_170 Hb_002876_270 Hb_002876_270 Hb_006816_470--Hb_002876_270 Hb_008176_010 Hb_008176_010 Hb_006816_470--Hb_008176_010 Hb_000019_200 Hb_000019_200 Hb_006816_470--Hb_000019_200 Hb_006277_010 Hb_006277_010 Hb_006816_470--Hb_006277_010 Hb_000406_130 Hb_000406_130 Hb_006816_470--Hb_000406_130 Hb_003544_010 Hb_003544_010 Hb_011386_020--Hb_003544_010 Hb_003467_030 Hb_003467_030 Hb_011386_020--Hb_003467_030 Hb_003994_110 Hb_003994_110 Hb_011386_020--Hb_003994_110 Hb_006274_050 Hb_006274_050 Hb_011386_020--Hb_006274_050 Hb_000337_050 Hb_000337_050 Hb_011386_020--Hb_000337_050 Hb_011386_020--Hb_000019_200 Hb_010422_070 Hb_010422_070 Hb_005167_020--Hb_010422_070 Hb_001863_020 Hb_001863_020 Hb_005167_020--Hb_001863_020 Hb_042202_060 Hb_042202_060 Hb_005167_020--Hb_042202_060 Hb_005167_020--Hb_002876_270 Hb_001399_010 Hb_001399_010 Hb_005167_020--Hb_001399_010 Hb_004128_070 Hb_004128_070 Hb_005167_020--Hb_004128_070 Hb_043708_010 Hb_043708_010 Hb_004650_060--Hb_043708_010 Hb_002534_030 Hb_002534_030 Hb_004650_060--Hb_002534_030 Hb_005588_110 Hb_005588_110 Hb_004650_060--Hb_005588_110 Hb_000154_010 Hb_000154_010 Hb_004650_060--Hb_000154_010 Hb_005282_020 Hb_005282_020 Hb_004650_060--Hb_005282_020 Hb_000012_160 Hb_000012_160 Hb_004650_060--Hb_000012_160 Hb_003581_290 Hb_003581_290 Hb_004339_030--Hb_003581_290 Hb_010288_060 Hb_010288_060 Hb_004339_030--Hb_010288_060 Hb_008147_080 Hb_008147_080 Hb_004339_030--Hb_008147_080 Hb_000008_350 Hb_000008_350 Hb_004339_030--Hb_000008_350 Hb_000739_210 Hb_000739_210 Hb_004339_030--Hb_000739_210 Hb_008375_010 Hb_008375_010 Hb_004339_030--Hb_008375_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.274464 0 0.809262 1.29509 0.350332 1.07296
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.12132 0.881505 4.31646 2.66885 6.52743

CAGE analysis