Hb_005803_040

Information

Type -
Description -
Location Contig5803: 45743-53423
Sequence    

Annotation

kegg
ID bvg:104908276
description uncharacterized LOC104908276
nr
ID XP_010695673.1
description PREDICTED: uncharacterized protein LOC104908276 [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID E2DN01
description Putative uncharacterized protein OS=Beta vulgaris PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005803_040 0.0 - - PREDICTED: uncharacterized protein LOC104908276 [Beta vulgaris subsp. vulgaris]
2 Hb_010883_130 0.1865411953 - - PREDICTED: pentatricopeptide repeat-containing protein At4g08210 [Jatropha curcas]
3 Hb_000340_050 0.2418262192 - - hypothetical protein EUGRSUZ_K033901, partial [Eucalyptus grandis]
4 Hb_000764_040 0.2470428644 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
5 Hb_000307_230 0.2773226173 - - -
6 Hb_172388_010 0.2878181537 - - PREDICTED: uncharacterized protein LOC105633410 [Jatropha curcas]
7 Hb_000144_040 0.2984804571 - - hypothetical protein POPTR_0006s06790g [Populus trichocarpa]
8 Hb_054467_010 0.3026464975 - - -
9 Hb_076795_010 0.3267257908 - - hypothetical protein POPTR_0001s07680g, partial [Populus trichocarpa]
10 Hb_088410_010 0.3268240729 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
11 Hb_056199_030 0.3300417816 - - PREDICTED: purine permease 3-like isoform X2 [Gossypium raimondii]
12 Hb_001304_120 0.3311409956 transcription factor TF Family: WRKY WRKY protein [Hevea brasiliensis]
13 Hb_013691_050 0.3337311986 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 [Jatropha curcas]
14 Hb_115376_010 0.3345572893 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
15 Hb_002473_140 0.3397765076 - - -
16 Hb_012098_190 0.3424730986 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
17 Hb_012295_020 0.3448131602 - - PREDICTED: uncharacterized protein LOC104223093 [Nicotiana sylvestris]
18 Hb_002599_040 0.3450157781 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
19 Hb_012071_010 0.3461545603 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
20 Hb_082987_010 0.3461974886 - - hypothetical protein CICLE_v10030423mg [Citrus clementina]

Gene co-expression network

sample Hb_005803_040 Hb_005803_040 Hb_010883_130 Hb_010883_130 Hb_005803_040--Hb_010883_130 Hb_000340_050 Hb_000340_050 Hb_005803_040--Hb_000340_050 Hb_000764_040 Hb_000764_040 Hb_005803_040--Hb_000764_040 Hb_000307_230 Hb_000307_230 Hb_005803_040--Hb_000307_230 Hb_172388_010 Hb_172388_010 Hb_005803_040--Hb_172388_010 Hb_000144_040 Hb_000144_040 Hb_005803_040--Hb_000144_040 Hb_010883_130--Hb_000764_040 Hb_010883_130--Hb_000307_230 Hb_082987_010 Hb_082987_010 Hb_010883_130--Hb_082987_010 Hb_012295_020 Hb_012295_020 Hb_010883_130--Hb_012295_020 Hb_012071_010 Hb_012071_010 Hb_010883_130--Hb_012071_010 Hb_004449_020 Hb_004449_020 Hb_000340_050--Hb_004449_020 Hb_000039_200 Hb_000039_200 Hb_000340_050--Hb_000039_200 Hb_003935_010 Hb_003935_010 Hb_000340_050--Hb_003935_010 Hb_029904_010 Hb_029904_010 Hb_000340_050--Hb_029904_010 Hb_001001_110 Hb_001001_110 Hb_000340_050--Hb_001001_110 Hb_000764_040--Hb_000307_230 Hb_155556_010 Hb_155556_010 Hb_000764_040--Hb_155556_010 Hb_001519_210 Hb_001519_210 Hb_000764_040--Hb_001519_210 Hb_000764_040--Hb_012071_010 Hb_002599_040 Hb_002599_040 Hb_000307_230--Hb_002599_040 Hb_106815_010 Hb_106815_010 Hb_000307_230--Hb_106815_010 Hb_000614_270 Hb_000614_270 Hb_000307_230--Hb_000614_270 Hb_115376_010 Hb_115376_010 Hb_000307_230--Hb_115376_010 Hb_076795_010 Hb_076795_010 Hb_172388_010--Hb_076795_010 Hb_012098_190 Hb_012098_190 Hb_172388_010--Hb_012098_190 Hb_138585_020 Hb_138585_020 Hb_172388_010--Hb_138585_020 Hb_008730_010 Hb_008730_010 Hb_172388_010--Hb_008730_010 Hb_172388_010--Hb_000307_230 Hb_001304_120 Hb_001304_120 Hb_000144_040--Hb_001304_120 Hb_001045_110 Hb_001045_110 Hb_000144_040--Hb_001045_110 Hb_001188_120 Hb_001188_120 Hb_000144_040--Hb_001188_120 Hb_000144_040--Hb_076795_010 Hb_000144_040--Hb_012098_190 Hb_056199_030 Hb_056199_030 Hb_000144_040--Hb_056199_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.00801908 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0193216 0.0365615 0.0230784 0.0407382

CAGE analysis