Hb_000764_040

Information

Type -
Description -
Location Contig764: 91741-94626
Sequence    

Annotation

kegg
ID pda:103696607
description uncharacterized LOC103696607
nr
ID XP_008776509.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
swissprot
ID -
description -
trembl
ID U5CUI2
description Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s04947p00003620 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000764_040 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
2 Hb_010883_130 0.1404539389 - - PREDICTED: pentatricopeptide repeat-containing protein At4g08210 [Jatropha curcas]
3 Hb_000307_230 0.2061653696 - - -
4 Hb_155556_010 0.2330641537 - - putative methylenetetrahydrofolate reductase [Morus notabilis]
5 Hb_005803_040 0.2470428644 - - PREDICTED: uncharacterized protein LOC104908276 [Beta vulgaris subsp. vulgaris]
6 Hb_001519_210 0.2556618185 - - hypothetical protein B456_003G032500 [Gossypium raimondii]
7 Hb_012071_010 0.2575986999 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
8 Hb_012295_020 0.2593246691 - - PREDICTED: uncharacterized protein LOC104223093 [Nicotiana sylvestris]
9 Hb_001780_010 0.2684131504 - - hypothetical protein CICLE_v10006597mg [Citrus clementina]
10 Hb_000920_070 0.2730200606 - - -
11 Hb_043792_020 0.2794756879 - - Retrotransposon gag protein [Medicago truncatula]
12 Hb_005439_010 0.291508393 - - PREDICTED: putative ribonuclease H protein At1g65750 [Beta vulgaris subsp. vulgaris]
13 Hb_050334_010 0.2978025707 - - -
14 Hb_002092_040 0.2989011854 - - PREDICTED: protein YLS3 [Jatropha curcas]
15 Hb_082987_010 0.3007827732 - - hypothetical protein CICLE_v10030423mg [Citrus clementina]
16 Hb_002360_020 0.301717809 - - ABC transporter family protein [Hevea brasiliensis]
17 Hb_095835_010 0.3052175343 - - hypothetical protein JCGZ_23410 [Jatropha curcas]
18 Hb_128531_010 0.3061215463 - - phosphoprotein phosphatase, putative [Ricinus communis]
19 Hb_032531_010 0.3113151119 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_002599_040 0.3124915904 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]

Gene co-expression network

sample Hb_000764_040 Hb_000764_040 Hb_010883_130 Hb_010883_130 Hb_000764_040--Hb_010883_130 Hb_000307_230 Hb_000307_230 Hb_000764_040--Hb_000307_230 Hb_155556_010 Hb_155556_010 Hb_000764_040--Hb_155556_010 Hb_005803_040 Hb_005803_040 Hb_000764_040--Hb_005803_040 Hb_001519_210 Hb_001519_210 Hb_000764_040--Hb_001519_210 Hb_012071_010 Hb_012071_010 Hb_000764_040--Hb_012071_010 Hb_010883_130--Hb_005803_040 Hb_010883_130--Hb_000307_230 Hb_082987_010 Hb_082987_010 Hb_010883_130--Hb_082987_010 Hb_012295_020 Hb_012295_020 Hb_010883_130--Hb_012295_020 Hb_010883_130--Hb_012071_010 Hb_002599_040 Hb_002599_040 Hb_000307_230--Hb_002599_040 Hb_106815_010 Hb_106815_010 Hb_000307_230--Hb_106815_010 Hb_000614_270 Hb_000614_270 Hb_000307_230--Hb_000614_270 Hb_115376_010 Hb_115376_010 Hb_000307_230--Hb_115376_010 Hb_001780_010 Hb_001780_010 Hb_155556_010--Hb_001780_010 Hb_000920_070 Hb_000920_070 Hb_155556_010--Hb_000920_070 Hb_155556_010--Hb_012071_010 Hb_155556_010--Hb_012295_020 Hb_001524_020 Hb_001524_020 Hb_155556_010--Hb_001524_020 Hb_155556_010--Hb_001519_210 Hb_000340_050 Hb_000340_050 Hb_005803_040--Hb_000340_050 Hb_005803_040--Hb_000307_230 Hb_172388_010 Hb_172388_010 Hb_005803_040--Hb_172388_010 Hb_000144_040 Hb_000144_040 Hb_005803_040--Hb_000144_040 Hb_050334_010 Hb_050334_010 Hb_001519_210--Hb_050334_010 Hb_043792_020 Hb_043792_020 Hb_001519_210--Hb_043792_020 Hb_001519_210--Hb_012295_020 Hb_032531_010 Hb_032531_010 Hb_001519_210--Hb_032531_010 Hb_001519_210--Hb_012071_010 Hb_002869_070 Hb_002869_070 Hb_001519_210--Hb_002869_070 Hb_012071_010--Hb_012295_020 Hb_000065_050 Hb_000065_050 Hb_012071_010--Hb_000065_050 Hb_012071_010--Hb_032531_010 Hb_012071_010--Hb_050334_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0367469 0.0679183 0.118041 0.15103

CAGE analysis