Hb_010883_130

Information

Type -
Description -
Location Contig10883: 110446-112321
Sequence    

Annotation

kegg
ID pop:POPTR_0002s08800g
description POPTRDRAFT_798715; pentatricopeptide repeat-containing family protein
nr
ID XP_012078359.1
description PREDICTED: pentatricopeptide repeat-containing protein At4g08210 [Jatropha curcas]
swissprot
ID Q9SUF9
description Pentatricopeptide repeat-containing protein At4g08210 OS=Arabidopsis thaliana GN=PCMP-E100 PE=3 SV=1
trembl
ID A0A067K9K1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12054 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02667: 109792-110526
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010883_130 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At4g08210 [Jatropha curcas]
2 Hb_000764_040 0.1404539389 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
3 Hb_005803_040 0.1865411953 - - PREDICTED: uncharacterized protein LOC104908276 [Beta vulgaris subsp. vulgaris]
4 Hb_000307_230 0.2363450795 - - -
5 Hb_082987_010 0.2800973176 - - hypothetical protein CICLE_v10030423mg [Citrus clementina]
6 Hb_012295_020 0.2842960757 - - PREDICTED: uncharacterized protein LOC104223093 [Nicotiana sylvestris]
7 Hb_012071_010 0.2843733265 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
8 Hb_056199_030 0.2934967138 - - PREDICTED: purine permease 3-like isoform X2 [Gossypium raimondii]
9 Hb_000065_050 0.3075735832 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
10 Hb_032531_010 0.3095147365 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_115376_010 0.3099165898 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
12 Hb_002360_020 0.311498065 - - ABC transporter family protein [Hevea brasiliensis]
13 Hb_001519_210 0.3139310072 - - hypothetical protein B456_003G032500 [Gossypium raimondii]
14 Hb_000144_040 0.3164922412 - - hypothetical protein POPTR_0006s06790g [Populus trichocarpa]
15 Hb_000446_060 0.3193181569 - - -
16 Hb_050334_010 0.3206510109 - - -
17 Hb_000340_050 0.3211758461 - - hypothetical protein EUGRSUZ_K033901, partial [Eucalyptus grandis]
18 Hb_001304_120 0.3237228263 transcription factor TF Family: WRKY WRKY protein [Hevea brasiliensis]
19 Hb_155556_010 0.3237368442 - - putative methylenetetrahydrofolate reductase [Morus notabilis]
20 Hb_012098_190 0.3243124873 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_010883_130 Hb_010883_130 Hb_000764_040 Hb_000764_040 Hb_010883_130--Hb_000764_040 Hb_005803_040 Hb_005803_040 Hb_010883_130--Hb_005803_040 Hb_000307_230 Hb_000307_230 Hb_010883_130--Hb_000307_230 Hb_082987_010 Hb_082987_010 Hb_010883_130--Hb_082987_010 Hb_012295_020 Hb_012295_020 Hb_010883_130--Hb_012295_020 Hb_012071_010 Hb_012071_010 Hb_010883_130--Hb_012071_010 Hb_000764_040--Hb_000307_230 Hb_155556_010 Hb_155556_010 Hb_000764_040--Hb_155556_010 Hb_000764_040--Hb_005803_040 Hb_001519_210 Hb_001519_210 Hb_000764_040--Hb_001519_210 Hb_000764_040--Hb_012071_010 Hb_000340_050 Hb_000340_050 Hb_005803_040--Hb_000340_050 Hb_005803_040--Hb_000307_230 Hb_172388_010 Hb_172388_010 Hb_005803_040--Hb_172388_010 Hb_000144_040 Hb_000144_040 Hb_005803_040--Hb_000144_040 Hb_002599_040 Hb_002599_040 Hb_000307_230--Hb_002599_040 Hb_106815_010 Hb_106815_010 Hb_000307_230--Hb_106815_010 Hb_000614_270 Hb_000614_270 Hb_000307_230--Hb_000614_270 Hb_115376_010 Hb_115376_010 Hb_000307_230--Hb_115376_010 Hb_011663_020 Hb_011663_020 Hb_082987_010--Hb_011663_020 Hb_082987_010--Hb_115376_010 Hb_082987_010--Hb_000764_040 Hb_159198_010 Hb_159198_010 Hb_082987_010--Hb_159198_010 Hb_002805_020 Hb_002805_020 Hb_082987_010--Hb_002805_020 Hb_012295_020--Hb_012071_010 Hb_000065_050 Hb_000065_050 Hb_012295_020--Hb_000065_050 Hb_032531_010 Hb_032531_010 Hb_012295_020--Hb_032531_010 Hb_012295_020--Hb_001519_210 Hb_050334_010 Hb_050334_010 Hb_012295_020--Hb_050334_010 Hb_012295_020--Hb_155556_010 Hb_012071_010--Hb_000065_050 Hb_012071_010--Hb_032531_010 Hb_012071_010--Hb_001519_210 Hb_012071_010--Hb_155556_010 Hb_012071_010--Hb_050334_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0270598 0.0506687 0.043257 0.0564025

CAGE analysis