Hb_082987_010

Information

Type -
Description -
Location Contig82987: 2760-3394
Sequence    

Annotation

kegg
ID cic:CICLE_v10030423mg
description hypothetical protein
nr
ID XP_006422815.1
description hypothetical protein CICLE_v10030423mg [Citrus clementina]
swissprot
ID -
description -
trembl
ID V4SB27
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030423mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_082987_010 0.0 - - hypothetical protein CICLE_v10030423mg [Citrus clementina]
2 Hb_011663_020 0.2761750202 - - Putative retrotransposon protein, identical [Solanum demissum]
3 Hb_010883_130 0.2800973176 - - PREDICTED: pentatricopeptide repeat-containing protein At4g08210 [Jatropha curcas]
4 Hb_115376_010 0.3005936484 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
5 Hb_000764_040 0.3007827732 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
6 Hb_159198_010 0.313113175 - - hypothetical protein VITISV_033829 [Vitis vinifera]
7 Hb_002805_020 0.322959057 transcription factor TF Family: SRS transcription factor, putative [Ricinus communis]
8 Hb_002486_010 0.3236104186 - - PREDICTED: sister chromatid cohesion 1 protein 1 [Jatropha curcas]
9 Hb_161010_010 0.3270094918 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
10 Hb_007199_010 0.3295963182 - - PREDICTED: protein kinase APK1A, chloroplastic [Nelumbo nucifera]
11 Hb_001062_020 0.3385906647 - - PREDICTED: uncharacterized protein LOC103962405 [Pyrus x bretschneideri]
12 Hb_003106_120 0.3449136977 - - PREDICTED: uncharacterized protein LOC105640439 [Jatropha curcas]
13 Hb_005803_040 0.3461974886 - - PREDICTED: uncharacterized protein LOC104908276 [Beta vulgaris subsp. vulgaris]
14 Hb_000685_090 0.3486357761 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
15 Hb_082182_010 0.3513999436 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
16 Hb_016748_010 0.3540140613 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_002188_140 0.3545954896 - - PREDICTED: uncharacterized protein LOC105650814 [Jatropha curcas]
18 Hb_063405_020 0.3569206794 - - PREDICTED: uncharacterized protein LOC105155919 [Sesamum indicum]
19 Hb_029904_010 0.3595756021 - - PREDICTED: uncharacterized protein LOC105635075 [Jatropha curcas]
20 Hb_003517_010 0.3610627525 - - PREDICTED: ABC transporter C family member 3-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_082987_010 Hb_082987_010 Hb_011663_020 Hb_011663_020 Hb_082987_010--Hb_011663_020 Hb_010883_130 Hb_010883_130 Hb_082987_010--Hb_010883_130 Hb_115376_010 Hb_115376_010 Hb_082987_010--Hb_115376_010 Hb_000764_040 Hb_000764_040 Hb_082987_010--Hb_000764_040 Hb_159198_010 Hb_159198_010 Hb_082987_010--Hb_159198_010 Hb_002805_020 Hb_002805_020 Hb_082987_010--Hb_002805_020 Hb_011663_020--Hb_159198_010 Hb_000840_040 Hb_000840_040 Hb_011663_020--Hb_000840_040 Hb_063405_020 Hb_063405_020 Hb_011663_020--Hb_063405_020 Hb_001062_020 Hb_001062_020 Hb_011663_020--Hb_001062_020 Hb_003185_100 Hb_003185_100 Hb_011663_020--Hb_003185_100 Hb_010883_130--Hb_000764_040 Hb_005803_040 Hb_005803_040 Hb_010883_130--Hb_005803_040 Hb_000307_230 Hb_000307_230 Hb_010883_130--Hb_000307_230 Hb_012295_020 Hb_012295_020 Hb_010883_130--Hb_012295_020 Hb_012071_010 Hb_012071_010 Hb_010883_130--Hb_012071_010 Hb_115376_010--Hb_001062_020 Hb_007790_040 Hb_007790_040 Hb_115376_010--Hb_007790_040 Hb_008326_010 Hb_008326_010 Hb_115376_010--Hb_008326_010 Hb_115376_010--Hb_000307_230 Hb_002791_020 Hb_002791_020 Hb_115376_010--Hb_002791_020 Hb_002599_040 Hb_002599_040 Hb_115376_010--Hb_002599_040 Hb_000764_040--Hb_000307_230 Hb_155556_010 Hb_155556_010 Hb_000764_040--Hb_155556_010 Hb_000764_040--Hb_005803_040 Hb_001519_210 Hb_001519_210 Hb_000764_040--Hb_001519_210 Hb_000764_040--Hb_012071_010 Hb_159198_010--Hb_000840_040 Hb_149515_010 Hb_149515_010 Hb_159198_010--Hb_149515_010 Hb_003517_010 Hb_003517_010 Hb_159198_010--Hb_003517_010 Hb_000067_030 Hb_000067_030 Hb_159198_010--Hb_000067_030 Hb_000141_010 Hb_000141_010 Hb_159198_010--Hb_000141_010 Hb_002740_170 Hb_002740_170 Hb_159198_010--Hb_002740_170 Hb_002486_010 Hb_002486_010 Hb_002805_020--Hb_002486_010 Hb_002660_060 Hb_002660_060 Hb_002805_020--Hb_002660_060 Hb_000671_160 Hb_000671_160 Hb_002805_020--Hb_000671_160 Hb_007747_180 Hb_007747_180 Hb_002805_020--Hb_007747_180 Hb_013766_010 Hb_013766_010 Hb_002805_020--Hb_013766_010 Hb_000297_020 Hb_000297_020 Hb_002805_020--Hb_000297_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.524155 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.719176 0.847111 1.3529 0.894294

CAGE analysis