Hb_002791_020

Information

Type -
Description -
Location Contig2791: 3241-7978
Sequence    

Annotation

kegg
ID vvi:104878095
description uncharacterized LOC104878095
nr
ID KFK35335.1
description hypothetical protein AALP_AA5G271700 [Arabis alpina]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID A0A087GZN3
description Uncharacterized protein OS=Arabis alpina GN=AALP_AA5G271700 PE=4 SV=1
Gene Ontology
ID GO:0003824
description rna-directed dna polymerase (reverse transcriptase) chromo zinc cchc-type peptidase active site polynucleotidyl ribonuclease h fold

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002791_020 0.0 - - hypothetical protein AALP_AA5G271700 [Arabis alpina]
2 Hb_008803_040 0.2165500377 - - PREDICTED: uncharacterized protein LOC105157106 [Sesamum indicum]
3 Hb_043708_010 0.2216077134 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
4 Hb_170156_010 0.232061394 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
5 Hb_001188_120 0.2332456839 - - hypothetical protein JCGZ_05575 [Jatropha curcas]
6 Hb_006569_050 0.2339050862 - - -
7 Hb_004650_060 0.2352106373 - - putative retrotransposon protein [Phyllostachys edulis]
8 Hb_001062_020 0.2454842938 - - PREDICTED: uncharacterized protein LOC103962405 [Pyrus x bretschneideri]
9 Hb_049275_010 0.2478025122 - - PREDICTED: F-box/LRR-repeat protein 4-like [Populus euphratica]
10 Hb_003944_020 0.2485606126 - - PREDICTED: uncharacterized protein LOC105110580 [Populus euphratica]
11 Hb_012092_080 0.2615479876 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15280-like [Malus domestica]
12 Hb_003186_040 0.2621075881 - - PREDICTED: protein DENND6A [Jatropha curcas]
13 Hb_057451_040 0.2649154701 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_004212_040 0.2682723605 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
15 Hb_007054_050 0.2699598895 - - -
16 Hb_041813_010 0.2702643139 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000144_040 0.2754314663 - - hypothetical protein POPTR_0006s06790g [Populus trichocarpa]
18 Hb_000154_010 0.2765651073 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_000705_250 0.2785819551 - - hypothetical protein CICLE_v10017607mg [Citrus clementina]
20 Hb_005396_060 0.2786892464 - - -

Gene co-expression network

sample Hb_002791_020 Hb_002791_020 Hb_008803_040 Hb_008803_040 Hb_002791_020--Hb_008803_040 Hb_043708_010 Hb_043708_010 Hb_002791_020--Hb_043708_010 Hb_170156_010 Hb_170156_010 Hb_002791_020--Hb_170156_010 Hb_001188_120 Hb_001188_120 Hb_002791_020--Hb_001188_120 Hb_006569_050 Hb_006569_050 Hb_002791_020--Hb_006569_050 Hb_004650_060 Hb_004650_060 Hb_002791_020--Hb_004650_060 Hb_000705_250 Hb_000705_250 Hb_008803_040--Hb_000705_250 Hb_003186_040 Hb_003186_040 Hb_008803_040--Hb_003186_040 Hb_026698_030 Hb_026698_030 Hb_008803_040--Hb_026698_030 Hb_000404_040 Hb_000404_040 Hb_008803_040--Hb_000404_040 Hb_000022_140 Hb_000022_140 Hb_008803_040--Hb_000022_140 Hb_173808_010 Hb_173808_010 Hb_008803_040--Hb_173808_010 Hb_043708_010--Hb_004650_060 Hb_019656_010 Hb_019656_010 Hb_043708_010--Hb_019656_010 Hb_131102_010 Hb_131102_010 Hb_043708_010--Hb_131102_010 Hb_000154_010 Hb_000154_010 Hb_043708_010--Hb_000154_010 Hb_008730_010 Hb_008730_010 Hb_043708_010--Hb_008730_010 Hb_000101_150 Hb_000101_150 Hb_170156_010--Hb_000101_150 Hb_170559_010 Hb_170559_010 Hb_170156_010--Hb_170559_010 Hb_000159_020 Hb_000159_020 Hb_170156_010--Hb_000159_020 Hb_003406_030 Hb_003406_030 Hb_170156_010--Hb_003406_030 Hb_151320_010 Hb_151320_010 Hb_170156_010--Hb_151320_010 Hb_012753_010 Hb_012753_010 Hb_001188_120--Hb_012753_010 Hb_001188_120--Hb_003186_040 Hb_085083_020 Hb_085083_020 Hb_001188_120--Hb_085083_020 Hb_076795_010 Hb_076795_010 Hb_001188_120--Hb_076795_010 Hb_185058_020 Hb_185058_020 Hb_001188_120--Hb_185058_020 Hb_005523_010 Hb_005523_010 Hb_006569_050--Hb_005523_010 Hb_002374_250 Hb_002374_250 Hb_006569_050--Hb_002374_250 Hb_006569_050--Hb_000705_250 Hb_000529_140 Hb_000529_140 Hb_006569_050--Hb_000529_140 Hb_080761_010 Hb_080761_010 Hb_006569_050--Hb_080761_010 Hb_005754_030 Hb_005754_030 Hb_006569_050--Hb_005754_030 Hb_002534_030 Hb_002534_030 Hb_004650_060--Hb_002534_030 Hb_005588_110 Hb_005588_110 Hb_004650_060--Hb_005588_110 Hb_004650_060--Hb_000154_010 Hb_005282_020 Hb_005282_020 Hb_004650_060--Hb_005282_020 Hb_000012_160 Hb_000012_160 Hb_004650_060--Hb_000012_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0293628 0.179042 0.0658191 0.0267984 0.0146965 0.0930057
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0166559 0.0655324 0.575305 0.187295 0.892569

CAGE analysis