Hb_003406_030

Information

Type -
Description -
Location Contig3406: 20359-22181
Sequence    

Annotation

kegg
ID csv:101206490
description enzymatic polyprotein-like
nr
ID XP_010497067.1
description PREDICTED: uncharacterized protein LOC104774100 [Camelina sativa]
swissprot
ID -
description -
trembl
ID W5G7L9
description Uncharacterized protein (Fragment) OS=Triticum aestivum PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 015_O04r.ab1: 15573-33071

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003406_030 0.0 - - PREDICTED: uncharacterized protein LOC104774100 [Camelina sativa]
2 Hb_170559_010 0.1468862383 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
3 Hb_171685_020 0.1893381651 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002687_070 0.235545034 - - polyprotein [Ananas comosus]
5 Hb_006040_050 0.2450941742 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003362_020 0.2478109077 - - PREDICTED: uncharacterized protein LOC104098435, partial [Nicotiana tomentosiformis]
7 Hb_005742_010 0.2603217043 - - hypothetical protein, partial [Pseudomonas fluorescens]
8 Hb_171685_040 0.2618688858 - - ribosomal protein S13 (mitochondrion) [Hevea brasiliensis]
9 Hb_041813_010 0.2635838395 - - conserved hypothetical protein [Ricinus communis]
10 Hb_170156_010 0.2672807024 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
11 Hb_115656_010 0.2682746554 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
12 Hb_002482_050 0.269418963 transcription factor TF Family: NAC F-box family protein [Populus trichocarpa]
13 Hb_034197_020 0.2698820368 - - hypothetical protein VITISV_041099 [Vitis vinifera]
14 Hb_024411_010 0.2721868305 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
15 Hb_013420_120 0.2749708895 - - -
16 Hb_062192_060 0.277105112 - - maturase (mitochondrion) [Hevea brasiliensis]
17 Hb_142570_010 0.2856693047 - - PREDICTED: uncharacterized protein LOC104907573 [Beta vulgaris subsp. vulgaris]
18 Hb_000518_040 0.2860261262 - - -
19 Hb_006405_040 0.287833024 - - hypothetical protein VITISV_026680 [Vitis vinifera]
20 Hb_139605_010 0.2886863858 - - polyprotein [Citrus endogenous pararetrovirus]

Gene co-expression network

sample Hb_003406_030 Hb_003406_030 Hb_170559_010 Hb_170559_010 Hb_003406_030--Hb_170559_010 Hb_171685_020 Hb_171685_020 Hb_003406_030--Hb_171685_020 Hb_002687_070 Hb_002687_070 Hb_003406_030--Hb_002687_070 Hb_006040_050 Hb_006040_050 Hb_003406_030--Hb_006040_050 Hb_003362_020 Hb_003362_020 Hb_003406_030--Hb_003362_020 Hb_005742_010 Hb_005742_010 Hb_003406_030--Hb_005742_010 Hb_170559_010--Hb_171685_020 Hb_013420_040 Hb_013420_040 Hb_170559_010--Hb_013420_040 Hb_170559_010--Hb_003362_020 Hb_170156_010 Hb_170156_010 Hb_170559_010--Hb_170156_010 Hb_170559_010--Hb_002687_070 Hb_171685_020--Hb_002687_070 Hb_171685_020--Hb_006040_050 Hb_013420_120 Hb_013420_120 Hb_171685_020--Hb_013420_120 Hb_013420_090 Hb_013420_090 Hb_171685_020--Hb_013420_090 Hb_171685_040 Hb_171685_040 Hb_171685_020--Hb_171685_040 Hb_013420_010 Hb_013420_010 Hb_171685_020--Hb_013420_010 Hb_002687_070--Hb_006040_050 Hb_144027_010 Hb_144027_010 Hb_002687_070--Hb_144027_010 Hb_002687_070--Hb_013420_090 Hb_001383_080 Hb_001383_080 Hb_002687_070--Hb_001383_080 Hb_001250_030 Hb_001250_030 Hb_002687_070--Hb_001250_030 Hb_006040_050--Hb_005742_010 Hb_006040_050--Hb_171685_040 Hb_002482_050 Hb_002482_050 Hb_006040_050--Hb_002482_050 Hb_006040_050--Hb_013420_120 Hb_062192_060 Hb_062192_060 Hb_003362_020--Hb_062192_060 Hb_041813_050 Hb_041813_050 Hb_003362_020--Hb_041813_050 Hb_088080_030 Hb_088080_030 Hb_003362_020--Hb_088080_030 Hb_062273_010 Hb_062273_010 Hb_003362_020--Hb_062273_010 Hb_004987_030 Hb_004987_030 Hb_003362_020--Hb_004987_030 Hb_072212_020 Hb_072212_020 Hb_003362_020--Hb_072212_020 Hb_005742_010--Hb_171685_040 Hb_171685_030 Hb_171685_030 Hb_005742_010--Hb_171685_030 Hb_005742_010--Hb_002482_050 Hb_005742_010--Hb_062192_060 Hb_000245_120 Hb_000245_120 Hb_005742_010--Hb_000245_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0726874 0 0 0.0241942 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0796513 0.0525518 0.353958

CAGE analysis