Hb_171685_020

Information

Type -
Description -
Location Contig171685: 8802-11489
Sequence    

Annotation

kegg
ID rcu:RCOM_2104770
description hypothetical protein
nr
ID XP_002534722.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q5D869
description DNA-directed RNA polymerase V subunit 1 OS=Arabidopsis thaliana GN=NRPE1 PE=1 SV=1
trembl
ID B9T903
description Putative uncharacterized protein (Fragment) OS=Ricinus communis GN=RCOM_2104770 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna-directed rna polymerase v subunit 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_171685_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002687_070 0.1433107438 - - polyprotein [Ananas comosus]
3 Hb_006040_050 0.1470327669 - - conserved hypothetical protein [Ricinus communis]
4 Hb_013420_120 0.1579486554 - - -
5 Hb_013420_090 0.1730547094 - - BnaCnng13090D [Brassica napus]
6 Hb_171685_040 0.1792746743 - - ribosomal protein S13 (mitochondrion) [Hevea brasiliensis]
7 Hb_013420_010 0.1878252714 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003406_030 0.1893381651 - - PREDICTED: uncharacterized protein LOC104774100 [Camelina sativa]
9 Hb_027357_010 0.1929352912 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_002482_050 0.1960583626 transcription factor TF Family: NAC F-box family protein [Populus trichocarpa]
11 Hb_005742_010 0.2144734726 - - hypothetical protein, partial [Pseudomonas fluorescens]
12 Hb_042463_020 0.2167586542 - - conserved hypothetical protein [Ricinus communis]
13 Hb_170559_010 0.2186129445 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
14 Hb_013420_040 0.2238996734 - - unnamed protein product [Vitis vinifera]
15 Hb_004445_030 0.2258685695 - - conserved hypothetical protein [Ricinus communis]
16 Hb_012163_050 0.2271425985 - - ATPase subunit [Medicago truncatula]
17 Hb_013420_020 0.2293692102 - - conserved hypothetical protein [Ricinus communis]
18 Hb_072212_020 0.2316125462 - - hypothetical protein B456_001G162300 [Gossypium raimondii]
19 Hb_000268_100 0.2359780921 - - -
20 Hb_062192_060 0.2386542184 - - maturase (mitochondrion) [Hevea brasiliensis]

Gene co-expression network

sample Hb_171685_020 Hb_171685_020 Hb_002687_070 Hb_002687_070 Hb_171685_020--Hb_002687_070 Hb_006040_050 Hb_006040_050 Hb_171685_020--Hb_006040_050 Hb_013420_120 Hb_013420_120 Hb_171685_020--Hb_013420_120 Hb_013420_090 Hb_013420_090 Hb_171685_020--Hb_013420_090 Hb_171685_040 Hb_171685_040 Hb_171685_020--Hb_171685_040 Hb_013420_010 Hb_013420_010 Hb_171685_020--Hb_013420_010 Hb_002687_070--Hb_006040_050 Hb_144027_010 Hb_144027_010 Hb_002687_070--Hb_144027_010 Hb_002687_070--Hb_013420_090 Hb_001383_080 Hb_001383_080 Hb_002687_070--Hb_001383_080 Hb_001250_030 Hb_001250_030 Hb_002687_070--Hb_001250_030 Hb_005742_010 Hb_005742_010 Hb_006040_050--Hb_005742_010 Hb_006040_050--Hb_171685_040 Hb_002482_050 Hb_002482_050 Hb_006040_050--Hb_002482_050 Hb_006040_050--Hb_013420_120 Hb_151320_010 Hb_151320_010 Hb_013420_120--Hb_151320_010 Hb_013420_120--Hb_013420_010 Hb_013420_120--Hb_171685_040 Hb_027357_010 Hb_027357_010 Hb_013420_120--Hb_027357_010 Hb_012163_050 Hb_012163_050 Hb_013420_090--Hb_012163_050 Hb_013420_020 Hb_013420_020 Hb_013420_090--Hb_013420_020 Hb_013420_050 Hb_013420_050 Hb_013420_090--Hb_013420_050 Hb_000405_010 Hb_000405_010 Hb_013420_090--Hb_000405_010 Hb_013420_090--Hb_027357_010 Hb_042463_020 Hb_042463_020 Hb_013420_090--Hb_042463_020 Hb_102602_030 Hb_102602_030 Hb_171685_040--Hb_102602_030 Hb_171685_040--Hb_027357_010 Hb_171685_040--Hb_013420_010 Hb_072212_020 Hb_072212_020 Hb_171685_040--Hb_072212_020 Hb_171685_040--Hb_005742_010 Hb_013420_010--Hb_027357_010 Hb_013420_010--Hb_042463_020 Hb_013420_010--Hb_072212_020 Hb_034168_070 Hb_034168_070 Hb_013420_010--Hb_034168_070 Hb_013420_010--Hb_012163_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0759491 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0688194 0.0299298 0.535586

CAGE analysis