Hb_170559_010

Information

Type -
Description -
Location Contig170559: 359-3668
Sequence    

Annotation

kegg
ID vvi:104880542
description uncharacterized LOC104880542
nr
ID WP_042918419.1
description MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
swissprot
ID -
description -
trembl
ID A0A0B0MQD4
description Phosphate import ATP-binding PstB 2 OS=Gossypium arboreum GN=F383_30012 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_170559_010 0.0 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
2 Hb_003406_030 0.1468862383 - - PREDICTED: uncharacterized protein LOC104774100 [Camelina sativa]
3 Hb_171685_020 0.2186129445 - - conserved hypothetical protein [Ricinus communis]
4 Hb_013420_040 0.2288525027 - - unnamed protein product [Vitis vinifera]
5 Hb_003362_020 0.235433637 - - PREDICTED: uncharacterized protein LOC104098435, partial [Nicotiana tomentosiformis]
6 Hb_170156_010 0.249549131 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
7 Hb_002687_070 0.2598916372 - - polyprotein [Ananas comosus]
8 Hb_062192_060 0.2626903968 - - maturase (mitochondrion) [Hevea brasiliensis]
9 Hb_000518_040 0.2649925971 - - -
10 Hb_072212_020 0.2651658256 - - hypothetical protein B456_001G162300 [Gossypium raimondii]
11 Hb_006040_050 0.2660206393 - - conserved hypothetical protein [Ricinus communis]
12 Hb_062273_010 0.2663197748 - - ATP synthase F0 subunit 9 [Chara vulgaris]
13 Hb_042463_020 0.2759255656 - - conserved hypothetical protein [Ricinus communis]
14 Hb_171685_040 0.2760065292 - - ribosomal protein S13 (mitochondrion) [Hevea brasiliensis]
15 Hb_005466_010 0.2792393559 - - ATPase subunit 6, partial (mitochondrion) [Celastrus scandens]
16 Hb_001523_030 0.2796052707 - - protein binding protein, putative [Ricinus communis]
17 Hb_053079_010 0.283059843 - - polyprotein [Citrus endogenous pararetrovirus]
18 Hb_005742_010 0.2830679413 - - hypothetical protein, partial [Pseudomonas fluorescens]
19 Hb_041813_010 0.2834571442 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002482_050 0.2848582568 transcription factor TF Family: NAC F-box family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_170559_010 Hb_170559_010 Hb_003406_030 Hb_003406_030 Hb_170559_010--Hb_003406_030 Hb_171685_020 Hb_171685_020 Hb_170559_010--Hb_171685_020 Hb_013420_040 Hb_013420_040 Hb_170559_010--Hb_013420_040 Hb_003362_020 Hb_003362_020 Hb_170559_010--Hb_003362_020 Hb_170156_010 Hb_170156_010 Hb_170559_010--Hb_170156_010 Hb_002687_070 Hb_002687_070 Hb_170559_010--Hb_002687_070 Hb_003406_030--Hb_171685_020 Hb_003406_030--Hb_002687_070 Hb_006040_050 Hb_006040_050 Hb_003406_030--Hb_006040_050 Hb_003406_030--Hb_003362_020 Hb_005742_010 Hb_005742_010 Hb_003406_030--Hb_005742_010 Hb_171685_020--Hb_002687_070 Hb_171685_020--Hb_006040_050 Hb_013420_120 Hb_013420_120 Hb_171685_020--Hb_013420_120 Hb_013420_090 Hb_013420_090 Hb_171685_020--Hb_013420_090 Hb_171685_040 Hb_171685_040 Hb_171685_020--Hb_171685_040 Hb_013420_010 Hb_013420_010 Hb_171685_020--Hb_013420_010 Hb_121041_010 Hb_121041_010 Hb_013420_040--Hb_121041_010 Hb_042463_020 Hb_042463_020 Hb_013420_040--Hb_042463_020 Hb_158203_010 Hb_158203_010 Hb_013420_040--Hb_158203_010 Hb_013420_040--Hb_171685_020 Hb_006474_010 Hb_006474_010 Hb_013420_040--Hb_006474_010 Hb_062192_060 Hb_062192_060 Hb_003362_020--Hb_062192_060 Hb_041813_050 Hb_041813_050 Hb_003362_020--Hb_041813_050 Hb_088080_030 Hb_088080_030 Hb_003362_020--Hb_088080_030 Hb_062273_010 Hb_062273_010 Hb_003362_020--Hb_062273_010 Hb_004987_030 Hb_004987_030 Hb_003362_020--Hb_004987_030 Hb_072212_020 Hb_072212_020 Hb_003362_020--Hb_072212_020 Hb_002791_020 Hb_002791_020 Hb_170156_010--Hb_002791_020 Hb_000101_150 Hb_000101_150 Hb_170156_010--Hb_000101_150 Hb_000159_020 Hb_000159_020 Hb_170156_010--Hb_000159_020 Hb_170156_010--Hb_003406_030 Hb_151320_010 Hb_151320_010 Hb_170156_010--Hb_151320_010 Hb_002687_070--Hb_006040_050 Hb_144027_010 Hb_144027_010 Hb_002687_070--Hb_144027_010 Hb_002687_070--Hb_013420_090 Hb_001383_080 Hb_001383_080 Hb_002687_070--Hb_001383_080 Hb_001250_030 Hb_001250_030 Hb_002687_070--Hb_001250_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0227226 0.0603009 0 0 0.0196527 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.068761 0.0433085 0.344824

CAGE analysis