Hb_170156_010

Information

Type -
Description -
Location Contig170156: 527-2847
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa014973mg
description hypothetical protein
nr
ID XP_009787832.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
swissprot
ID P31843
description RNA-directed DNA polymerase homolog OS=Oenothera berteroana PE=4 SV=1
trembl
ID M5WXB0
description Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa014973mg PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_170156_010 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
2 Hb_002791_020 0.232061394 - - hypothetical protein AALP_AA5G271700 [Arabis alpina]
3 Hb_000101_150 0.2486498492 - - -
4 Hb_170559_010 0.249549131 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
5 Hb_000159_020 0.264306733 - - PREDICTED: UDP-glycosyltransferase 74F2-like [Jatropha curcas]
6 Hb_003406_030 0.2672807024 - - PREDICTED: uncharacterized protein LOC104774100 [Camelina sativa]
7 Hb_151320_010 0.2684592955 - - -
8 Hb_004212_040 0.2731131195 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
9 Hb_043708_010 0.2757122912 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
10 Hb_057451_040 0.2865444742 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_000172_130 0.2927355696 - - hypothetical protein JCGZ_24076 [Jatropha curcas]
12 Hb_171685_030 0.2934219698 - - URF-1 [Citrullus lanatus]
13 Hb_053079_010 0.2943130897 - - polyprotein [Citrus endogenous pararetrovirus]
14 Hb_002122_020 0.2954007116 - - PREDICTED: putative disease resistance protein RGA4, partial [Jatropha curcas]
15 Hb_008730_010 0.2967490235 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
16 Hb_035687_010 0.2997358415 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
17 Hb_004195_220 0.2998963137 - - hypothetical protein PRUPE_ppa005288mg [Prunus persica]
18 Hb_005742_010 0.3018990097 - - hypothetical protein, partial [Pseudomonas fluorescens]
19 Hb_132384_010 0.3047735944 - - hypothetical protein VITISV_018559 [Vitis vinifera]
20 Hb_001523_030 0.3052871827 - - protein binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_170156_010 Hb_170156_010 Hb_002791_020 Hb_002791_020 Hb_170156_010--Hb_002791_020 Hb_000101_150 Hb_000101_150 Hb_170156_010--Hb_000101_150 Hb_170559_010 Hb_170559_010 Hb_170156_010--Hb_170559_010 Hb_000159_020 Hb_000159_020 Hb_170156_010--Hb_000159_020 Hb_003406_030 Hb_003406_030 Hb_170156_010--Hb_003406_030 Hb_151320_010 Hb_151320_010 Hb_170156_010--Hb_151320_010 Hb_008803_040 Hb_008803_040 Hb_002791_020--Hb_008803_040 Hb_043708_010 Hb_043708_010 Hb_002791_020--Hb_043708_010 Hb_001188_120 Hb_001188_120 Hb_002791_020--Hb_001188_120 Hb_006569_050 Hb_006569_050 Hb_002791_020--Hb_006569_050 Hb_004650_060 Hb_004650_060 Hb_002791_020--Hb_004650_060 Hb_008730_010 Hb_008730_010 Hb_000101_150--Hb_008730_010 Hb_076795_010 Hb_076795_010 Hb_000101_150--Hb_076795_010 Hb_000101_150--Hb_043708_010 Hb_000031_350 Hb_000031_350 Hb_000101_150--Hb_000031_350 Hb_022132_020 Hb_022132_020 Hb_000101_150--Hb_022132_020 Hb_170559_010--Hb_003406_030 Hb_171685_020 Hb_171685_020 Hb_170559_010--Hb_171685_020 Hb_013420_040 Hb_013420_040 Hb_170559_010--Hb_013420_040 Hb_003362_020 Hb_003362_020 Hb_170559_010--Hb_003362_020 Hb_002687_070 Hb_002687_070 Hb_170559_010--Hb_002687_070 Hb_034455_010 Hb_034455_010 Hb_000159_020--Hb_034455_010 Hb_171685_030 Hb_171685_030 Hb_000159_020--Hb_171685_030 Hb_072212_020 Hb_072212_020 Hb_000159_020--Hb_072212_020 Hb_102602_030 Hb_102602_030 Hb_000159_020--Hb_102602_030 Hb_171685_040 Hb_171685_040 Hb_000159_020--Hb_171685_040 Hb_189099_020 Hb_189099_020 Hb_000159_020--Hb_189099_020 Hb_003406_030--Hb_171685_020 Hb_003406_030--Hb_002687_070 Hb_006040_050 Hb_006040_050 Hb_003406_030--Hb_006040_050 Hb_003406_030--Hb_003362_020 Hb_005742_010 Hb_005742_010 Hb_003406_030--Hb_005742_010 Hb_013420_120 Hb_013420_120 Hb_151320_010--Hb_013420_120 Hb_004195_220 Hb_004195_220 Hb_151320_010--Hb_004195_220 Hb_000987_110 Hb_000987_110 Hb_151320_010--Hb_000987_110 Hb_141425_010 Hb_141425_010 Hb_151320_010--Hb_141425_010 Hb_123396_010 Hb_123396_010 Hb_151320_010--Hb_123396_010 Hb_151320_010--Hb_005742_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00930938 0.0307199 0.00690497 0 0.0174291 0.00889494
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.126419 0.0132339 0.211364

CAGE analysis