Hb_000245_120

Information

Type -
Description -
Location Contig245: 120559-121237
Sequence    

Annotation

kegg
ID pop:POPTR_0001s18890g
description POPTRDRAFT_751839; hypothetical protein
nr
ID XP_002299733.2
description hypothetical protein POPTR_0001s18890g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9GGL6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s18890g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000245_120 0.0 - - hypothetical protein POPTR_0001s18890g [Populus trichocarpa]
2 Hb_005742_010 0.2080633819 - - hypothetical protein, partial [Pseudomonas fluorescens]
3 Hb_041813_080 0.2153627053 - - -
4 Hb_002073_110 0.2373987614 - - conserved hypothetical protein [Ricinus communis]
5 Hb_006040_050 0.2521412936 - - conserved hypothetical protein [Ricinus communis]
6 Hb_027010_030 0.2666733874 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
7 Hb_143769_010 0.2703215204 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase MRH1 [Jatropha curcas]
8 Hb_041813_010 0.2732411673 - - conserved hypothetical protein [Ricinus communis]
9 Hb_063866_010 0.2764823629 - - PREDICTED: uncharacterized protein LOC105632605 [Jatropha curcas]
10 Hb_000001_100 0.2836354742 - - -
11 Hb_159308_020 0.289502571 - - hypothetical protein B456_002G027900 [Gossypium raimondii]
12 Hb_012833_020 0.2933560732 - - -
13 Hb_000327_370 0.2944218097 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
14 Hb_001221_240 0.294492097 - - conserved hypothetical protein [Ricinus communis]
15 Hb_062192_060 0.2984934804 - - maturase (mitochondrion) [Hevea brasiliensis]
16 Hb_102602_010 0.2988639482 - - orf175 (mitochondrion) [Panax ginseng]
17 Hb_007590_030 0.3013338351 - - PREDICTED: iridoid synthase [Jatropha curcas]
18 Hb_000193_090 0.3023182185 - - cysteine protease, putative [Ricinus communis]
19 Hb_001221_250 0.3030458931 - - -
20 Hb_102602_030 0.3034041913 - - hypothetical protein (mitochondrion) [Vicia faba]

Gene co-expression network

sample Hb_000245_120 Hb_000245_120 Hb_005742_010 Hb_005742_010 Hb_000245_120--Hb_005742_010 Hb_041813_080 Hb_041813_080 Hb_000245_120--Hb_041813_080 Hb_002073_110 Hb_002073_110 Hb_000245_120--Hb_002073_110 Hb_006040_050 Hb_006040_050 Hb_000245_120--Hb_006040_050 Hb_027010_030 Hb_027010_030 Hb_000245_120--Hb_027010_030 Hb_143769_010 Hb_143769_010 Hb_000245_120--Hb_143769_010 Hb_005742_010--Hb_006040_050 Hb_171685_040 Hb_171685_040 Hb_005742_010--Hb_171685_040 Hb_171685_030 Hb_171685_030 Hb_005742_010--Hb_171685_030 Hb_002482_050 Hb_002482_050 Hb_005742_010--Hb_002482_050 Hb_062192_060 Hb_062192_060 Hb_005742_010--Hb_062192_060 Hb_041813_080--Hb_002073_110 Hb_041813_080--Hb_143769_010 Hb_002534_010 Hb_002534_010 Hb_041813_080--Hb_002534_010 Hb_118034_010 Hb_118034_010 Hb_041813_080--Hb_118034_010 Hb_041813_080--Hb_005742_010 Hb_002073_110--Hb_002534_010 Hb_004218_300 Hb_004218_300 Hb_002073_110--Hb_004218_300 Hb_063866_010 Hb_063866_010 Hb_002073_110--Hb_063866_010 Hb_005228_060 Hb_005228_060 Hb_002073_110--Hb_005228_060 Hb_004291_030 Hb_004291_030 Hb_002073_110--Hb_004291_030 Hb_006040_050--Hb_171685_040 Hb_171685_020 Hb_171685_020 Hb_006040_050--Hb_171685_020 Hb_002687_070 Hb_002687_070 Hb_006040_050--Hb_002687_070 Hb_006040_050--Hb_002482_050 Hb_013420_120 Hb_013420_120 Hb_006040_050--Hb_013420_120 Hb_032718_010 Hb_032718_010 Hb_027010_030--Hb_032718_010 Hb_041813_010 Hb_041813_010 Hb_027010_030--Hb_041813_010 Hb_026698_030 Hb_026698_030 Hb_027010_030--Hb_026698_030 Hb_053079_010 Hb_053079_010 Hb_027010_030--Hb_053079_010 Hb_067345_020 Hb_067345_020 Hb_027010_030--Hb_067345_020 Hb_017098_060 Hb_017098_060 Hb_027010_030--Hb_017098_060 Hb_012463_010 Hb_012463_010 Hb_143769_010--Hb_012463_010 Hb_011478_010 Hb_011478_010 Hb_143769_010--Hb_011478_010 Hb_027760_030 Hb_027760_030 Hb_143769_010--Hb_027760_030 Hb_020763_010 Hb_020763_010 Hb_143769_010--Hb_020763_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0563083 0 0.243999 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.200489 0.0504839 0.662744

CAGE analysis