Hb_002534_010

Information

Type -
Description -
Location Contig2534: 4216-5736
Sequence    

Annotation

kegg
ID rcu:RCOM_1471580
description Alpha-expansin 15 precursor, putative
nr
ID XP_012080287.1
description PREDICTED: expansin-A1-like [Jatropha curcas]
swissprot
ID O80622
description Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=2 SV=2
trembl
ID A0A067K8F0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11644 PE=3 SV=1
Gene Ontology
ID GO:0005576
description expansin alpha

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002534_010 0.0 - - PREDICTED: expansin-A1-like [Jatropha curcas]
2 Hb_002025_070 0.1647554067 - - PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic-like isoform X1 [Populus euphratica]
3 Hb_002759_050 0.1664580494 - - PREDICTED: protein ALTERED XYLOGLUCAN 4 [Jatropha curcas]
4 Hb_029879_150 0.1704416583 desease resistance Gene Name: NB-ARC putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
5 Hb_002073_130 0.1847530699 - - PREDICTED: uncharacterized protein LOC100246830 [Vitis vinifera]
6 Hb_000477_090 0.1871590913 - - PREDICTED: uncharacterized protein LOC105639302 [Jatropha curcas]
7 Hb_002073_110 0.1884011553 - - conserved hypothetical protein [Ricinus communis]
8 Hb_010738_020 0.191782885 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
9 Hb_000186_160 0.194884785 - - hypothetical protein POPTR_0011s01120g [Populus trichocarpa]
10 Hb_001894_100 0.1964069003 - - PREDICTED: kininogen-1-like [Jatropha curcas]
11 Hb_133076_010 0.1982420036 - - PREDICTED: scopoletin glucosyltransferase-like [Populus euphratica]
12 Hb_001863_470 0.1982765882 - - PREDICTED: uncharacterized protein LOC105630613 [Jatropha curcas]
13 Hb_001790_060 0.1990281603 - - PREDICTED: uncharacterized protein LOC105644961 [Jatropha curcas]
14 Hb_000809_010 0.2004380274 - - hypothetical protein JCGZ_12342 [Jatropha curcas]
15 Hb_000264_040 0.2017206914 - - sugar transporter, putative [Ricinus communis]
16 Hb_003151_020 0.2021465204 - - Ankyrin repeat family protein, putative [Theobroma cacao]
17 Hb_132880_010 0.2027539309 - - PREDICTED: uncharacterized protein LOC105641595 [Jatropha curcas]
18 Hb_003162_060 0.2040449272 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
19 Hb_005539_150 0.2041051435 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 33 [Jatropha curcas]
20 Hb_008195_090 0.2043938558 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002534_010 Hb_002534_010 Hb_002025_070 Hb_002025_070 Hb_002534_010--Hb_002025_070 Hb_002759_050 Hb_002759_050 Hb_002534_010--Hb_002759_050 Hb_029879_150 Hb_029879_150 Hb_002534_010--Hb_029879_150 Hb_002073_130 Hb_002073_130 Hb_002534_010--Hb_002073_130 Hb_000477_090 Hb_000477_090 Hb_002534_010--Hb_000477_090 Hb_002073_110 Hb_002073_110 Hb_002534_010--Hb_002073_110 Hb_002025_070--Hb_029879_150 Hb_022693_010 Hb_022693_010 Hb_002025_070--Hb_022693_010 Hb_000235_040 Hb_000235_040 Hb_002025_070--Hb_000235_040 Hb_000139_360 Hb_000139_360 Hb_002025_070--Hb_000139_360 Hb_002042_210 Hb_002042_210 Hb_002025_070--Hb_002042_210 Hb_016093_030 Hb_016093_030 Hb_002025_070--Hb_016093_030 Hb_000264_040 Hb_000264_040 Hb_002759_050--Hb_000264_040 Hb_002886_010 Hb_002886_010 Hb_002759_050--Hb_002886_010 Hb_000445_120 Hb_000445_120 Hb_002759_050--Hb_000445_120 Hb_003261_010 Hb_003261_010 Hb_002759_050--Hb_003261_010 Hb_000200_360 Hb_000200_360 Hb_002759_050--Hb_000200_360 Hb_001959_100 Hb_001959_100 Hb_002759_050--Hb_001959_100 Hb_003162_060 Hb_003162_060 Hb_029879_150--Hb_003162_060 Hb_020956_030 Hb_020956_030 Hb_029879_150--Hb_020956_030 Hb_002336_050 Hb_002336_050 Hb_029879_150--Hb_002336_050 Hb_027472_060 Hb_027472_060 Hb_029879_150--Hb_027472_060 Hb_005532_030 Hb_005532_030 Hb_029879_150--Hb_005532_030 Hb_132880_010 Hb_132880_010 Hb_002073_130--Hb_132880_010 Hb_000809_010 Hb_000809_010 Hb_002073_130--Hb_000809_010 Hb_001593_040 Hb_001593_040 Hb_002073_130--Hb_001593_040 Hb_064445_020 Hb_064445_020 Hb_002073_130--Hb_064445_020 Hb_010883_160 Hb_010883_160 Hb_002073_130--Hb_010883_160 Hb_003151_020 Hb_003151_020 Hb_002073_130--Hb_003151_020 Hb_005539_150 Hb_005539_150 Hb_000477_090--Hb_005539_150 Hb_008195_090 Hb_008195_090 Hb_000477_090--Hb_008195_090 Hb_001894_100 Hb_001894_100 Hb_000477_090--Hb_001894_100 Hb_033681_030 Hb_033681_030 Hb_000477_090--Hb_033681_030 Hb_029386_010 Hb_029386_010 Hb_000477_090--Hb_029386_010 Hb_003358_030 Hb_003358_030 Hb_000477_090--Hb_003358_030 Hb_041813_080 Hb_041813_080 Hb_002073_110--Hb_041813_080 Hb_004218_300 Hb_004218_300 Hb_002073_110--Hb_004218_300 Hb_063866_010 Hb_063866_010 Hb_002073_110--Hb_063866_010 Hb_005228_060 Hb_005228_060 Hb_002073_110--Hb_005228_060 Hb_004291_030 Hb_004291_030 Hb_002073_110--Hb_004291_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.191605 0.434398 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0999972 0.0224718 0.776574

CAGE analysis