Hb_002073_110

Information

Type -
Description -
Location Contig2073: 70633-72856
Sequence    

Annotation

kegg
ID rcu:RCOM_0731750
description hypothetical protein
nr
ID XP_002520470.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S3A1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0731750 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21373: 71352-72150 , PASA_asmbl_21374: 72348-72514
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002073_110 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002534_010 0.1884011553 - - PREDICTED: expansin-A1-like [Jatropha curcas]
3 Hb_041813_080 0.1957570357 - - -
4 Hb_004218_300 0.198523675 - - hypothetical protein JCGZ_24534 [Jatropha curcas]
5 Hb_063866_010 0.2214914458 - - PREDICTED: uncharacterized protein LOC105632605 [Jatropha curcas]
6 Hb_005228_060 0.2255425705 - - PREDICTED: uncharacterized protein LOC102604101 [Solanum tuberosum]
7 Hb_004291_030 0.2271622397 - - PREDICTED: MATE efflux family protein 9-like [Jatropha curcas]
8 Hb_002025_070 0.2287707701 - - PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic-like isoform X1 [Populus euphratica]
9 Hb_000186_160 0.2351307069 - - hypothetical protein POPTR_0011s01120g [Populus trichocarpa]
10 Hb_000245_120 0.2373987614 - - hypothetical protein POPTR_0001s18890g [Populus trichocarpa]
11 Hb_010738_020 0.2377232346 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
12 Hb_002886_010 0.2430745032 - - conserved hypothetical protein [Ricinus communis]
13 Hb_189208_040 0.2431670843 - - hypothetical protein POPTR_0002s18920g [Populus trichocarpa]
14 Hb_001124_230 0.2467446513 - - PREDICTED: divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic [Jatropha curcas]
15 Hb_002759_050 0.2485424442 - - PREDICTED: protein ALTERED XYLOGLUCAN 4 [Jatropha curcas]
16 Hb_031330_020 0.2542703448 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
17 Hb_000340_240 0.255008148 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003197_010 0.2552702538 - - conserved hypothetical protein [Ricinus communis]
19 Hb_006915_010 0.2557288675 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
20 Hb_028960_010 0.2570543275 - - phosphoglycerate kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002073_110 Hb_002073_110 Hb_002534_010 Hb_002534_010 Hb_002073_110--Hb_002534_010 Hb_041813_080 Hb_041813_080 Hb_002073_110--Hb_041813_080 Hb_004218_300 Hb_004218_300 Hb_002073_110--Hb_004218_300 Hb_063866_010 Hb_063866_010 Hb_002073_110--Hb_063866_010 Hb_005228_060 Hb_005228_060 Hb_002073_110--Hb_005228_060 Hb_004291_030 Hb_004291_030 Hb_002073_110--Hb_004291_030 Hb_002025_070 Hb_002025_070 Hb_002534_010--Hb_002025_070 Hb_002759_050 Hb_002759_050 Hb_002534_010--Hb_002759_050 Hb_029879_150 Hb_029879_150 Hb_002534_010--Hb_029879_150 Hb_002073_130 Hb_002073_130 Hb_002534_010--Hb_002073_130 Hb_000477_090 Hb_000477_090 Hb_002534_010--Hb_000477_090 Hb_000245_120 Hb_000245_120 Hb_041813_080--Hb_000245_120 Hb_143769_010 Hb_143769_010 Hb_041813_080--Hb_143769_010 Hb_041813_080--Hb_002534_010 Hb_118034_010 Hb_118034_010 Hb_041813_080--Hb_118034_010 Hb_005742_010 Hb_005742_010 Hb_041813_080--Hb_005742_010 Hb_000638_100 Hb_000638_100 Hb_004218_300--Hb_000638_100 Hb_004724_260 Hb_004724_260 Hb_004218_300--Hb_004724_260 Hb_006915_010 Hb_006915_010 Hb_004218_300--Hb_006915_010 Hb_031330_020 Hb_031330_020 Hb_004218_300--Hb_031330_020 Hb_002014_070 Hb_002014_070 Hb_004218_300--Hb_002014_070 Hb_063866_010--Hb_031330_020 Hb_011053_020 Hb_011053_020 Hb_063866_010--Hb_011053_020 Hb_183963_010 Hb_183963_010 Hb_063866_010--Hb_183963_010 Hb_002527_040 Hb_002527_040 Hb_063866_010--Hb_002527_040 Hb_002894_090 Hb_002894_090 Hb_063866_010--Hb_002894_090 Hb_007933_030 Hb_007933_030 Hb_063866_010--Hb_007933_030 Hb_007595_020 Hb_007595_020 Hb_005228_060--Hb_007595_020 Hb_007595_050 Hb_007595_050 Hb_005228_060--Hb_007595_050 Hb_000367_220 Hb_000367_220 Hb_005228_060--Hb_000367_220 Hb_028960_010 Hb_028960_010 Hb_005228_060--Hb_028960_010 Hb_068804_110 Hb_068804_110 Hb_005228_060--Hb_068804_110 Hb_000186_160 Hb_000186_160 Hb_005228_060--Hb_000186_160 Hb_000482_180 Hb_000482_180 Hb_004291_030--Hb_000482_180 Hb_011537_130 Hb_011537_130 Hb_004291_030--Hb_011537_130 Hb_048755_030 Hb_048755_030 Hb_004291_030--Hb_048755_030 Hb_020367_040 Hb_020367_040 Hb_004291_030--Hb_020367_040 Hb_005675_030 Hb_005675_030 Hb_004291_030--Hb_005675_030 Hb_002701_250 Hb_002701_250 Hb_004291_030--Hb_002701_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0156491 0.509016 1.81033 3.17186 0.0303429 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 2.4153 0.426647 9.93497

CAGE analysis