Hb_002014_070

Information

Type -
Description -
Location Contig2014: 88190-101730
Sequence    

Annotation

kegg
ID pop:POPTR_0018s08790g
description POPTRDRAFT_261857; hypothetical protein
nr
ID XP_012076695.1
description PREDICTED: probable chlorophyll(ide) b reductase NYC1, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID Q5N800
description Probable chlorophyll(ide) b reductase NYC1, chloroplastic OS=Oryza sativa subsp. japonica GN=NYC1 PE=1 SV=1
trembl
ID A0A067KBS6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07247 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002014_070 0.0 - - PREDICTED: probable chlorophyll(ide) b reductase NYC1, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_053998_020 0.1462826487 - - -
3 Hb_041813_060 0.2001096154 - - ribosomal protein L10 (mitochondrion) [Ricinus communis]
4 Hb_004218_300 0.210563238 - - hypothetical protein JCGZ_24534 [Jatropha curcas]
5 Hb_002972_030 0.2182138889 - - protein with unknown function [Ricinus communis]
6 Hb_005332_150 0.2198419285 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46610 [Jatropha curcas]
7 Hb_000029_380 0.2214261559 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000574_330 0.2276666111 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
9 Hb_007527_040 0.2282767877 - - PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]
10 Hb_003333_040 0.2306309796 - - ankyrin repeat-containing protein, putative [Ricinus communis]
11 Hb_002686_060 0.2324834301 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000172_620 0.2333615449 - - hypothetical protein VITISV_033646 [Vitis vinifera]
13 Hb_168031_020 0.24042268 - - PREDICTED: uncharacterized protein LOC105646684 isoform X2 [Jatropha curcas]
14 Hb_004109_130 0.2407899211 - - PREDICTED: translation initiation factor IF-2, chloroplastic [Jatropha curcas]
15 Hb_000038_020 0.245226062 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]
16 Hb_003125_100 0.2457655522 - - NAD(P)-binding Rossmann-fold superfamily protein [Theobroma cacao]
17 Hb_173808_010 0.2458366697 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
18 Hb_013420_060 0.2466649018 - - NADH dehydrogenase subunit 7 [Nymphaea sp. Bergthorsson 0401]
19 Hb_000710_160 0.2469955751 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
20 Hb_158144_020 0.2477019469 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Vitis vinifera]

Gene co-expression network

sample Hb_002014_070 Hb_002014_070 Hb_053998_020 Hb_053998_020 Hb_002014_070--Hb_053998_020 Hb_041813_060 Hb_041813_060 Hb_002014_070--Hb_041813_060 Hb_004218_300 Hb_004218_300 Hb_002014_070--Hb_004218_300 Hb_002972_030 Hb_002972_030 Hb_002014_070--Hb_002972_030 Hb_005332_150 Hb_005332_150 Hb_002014_070--Hb_005332_150 Hb_000029_380 Hb_000029_380 Hb_002014_070--Hb_000029_380 Hb_062273_010 Hb_062273_010 Hb_053998_020--Hb_062273_010 Hb_053998_020--Hb_041813_060 Hb_003333_040 Hb_003333_040 Hb_053998_020--Hb_003333_040 Hb_001523_030 Hb_001523_030 Hb_053998_020--Hb_001523_030 Hb_102602_020 Hb_102602_020 Hb_053998_020--Hb_102602_020 Hb_041813_060--Hb_000029_380 Hb_000574_330 Hb_000574_330 Hb_041813_060--Hb_000574_330 Hb_003125_100 Hb_003125_100 Hb_041813_060--Hb_003125_100 Hb_005154_090 Hb_005154_090 Hb_041813_060--Hb_005154_090 Hb_041813_040 Hb_041813_040 Hb_041813_060--Hb_041813_040 Hb_001295_080 Hb_001295_080 Hb_041813_060--Hb_001295_080 Hb_002073_110 Hb_002073_110 Hb_004218_300--Hb_002073_110 Hb_000638_100 Hb_000638_100 Hb_004218_300--Hb_000638_100 Hb_004724_260 Hb_004724_260 Hb_004218_300--Hb_004724_260 Hb_006915_010 Hb_006915_010 Hb_004218_300--Hb_006915_010 Hb_031330_020 Hb_031330_020 Hb_004218_300--Hb_031330_020 Hb_005288_180 Hb_005288_180 Hb_002972_030--Hb_005288_180 Hb_000516_080 Hb_000516_080 Hb_002972_030--Hb_000516_080 Hb_000977_170 Hb_000977_170 Hb_002972_030--Hb_000977_170 Hb_005181_120 Hb_005181_120 Hb_002972_030--Hb_005181_120 Hb_005914_210 Hb_005914_210 Hb_002972_030--Hb_005914_210 Hb_163145_030 Hb_163145_030 Hb_002972_030--Hb_163145_030 Hb_000038_020 Hb_000038_020 Hb_005332_150--Hb_000038_020 Hb_004109_130 Hb_004109_130 Hb_005332_150--Hb_004109_130 Hb_000966_040 Hb_000966_040 Hb_005332_150--Hb_000966_040 Hb_168031_020 Hb_168031_020 Hb_005332_150--Hb_168031_020 Hb_000069_370 Hb_000069_370 Hb_005332_150--Hb_000069_370 Hb_166127_030 Hb_166127_030 Hb_005332_150--Hb_166127_030 Hb_012940_020 Hb_012940_020 Hb_000029_380--Hb_012940_020 Hb_068804_110 Hb_068804_110 Hb_000029_380--Hb_068804_110 Hb_005228_060 Hb_005228_060 Hb_000029_380--Hb_005228_060 Hb_156850_020 Hb_156850_020 Hb_000029_380--Hb_156850_020 Hb_185274_020 Hb_185274_020 Hb_000029_380--Hb_185274_020 Hb_007595_050 Hb_007595_050 Hb_000029_380--Hb_007595_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0215222 0.071688 0.131747 0.081803 0 0.0995545
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.115539 0.074518 0.707033

CAGE analysis