Hb_003333_040

Information

Type -
Description -
Location Contig3333: 26663-32705
Sequence    

Annotation

kegg
ID rcu:RCOM_1577280
description ankyrin repeat-containing protein, putative
nr
ID XP_002513462.1
description ankyrin repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9C7A2
description Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1
trembl
ID B9RI93
description Ankyrin repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1577280 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003333_040 0.0 - - ankyrin repeat-containing protein, putative [Ricinus communis]
2 Hb_013420_060 0.1652833146 - - NADH dehydrogenase subunit 7 [Nymphaea sp. Bergthorsson 0401]
3 Hb_001671_090 0.1697958903 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_007413_030 0.1891479009 - - kinase, putative [Ricinus communis]
5 Hb_032733_020 0.1953555837 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like isoform X4 [Citrus sinensis]
6 Hb_053998_020 0.2007017985 - - -
7 Hb_114271_010 0.2120533589 - - hypothetical protein JCGZ_19461 [Jatropha curcas]
8 Hb_000122_260 0.2219947593 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 1-like [Jatropha curcas]
9 Hb_002835_090 0.2224990275 - - RecName: Full=Elongation factor Tu, chloroplastic; Short=EF-Tu; Flags: Precursor [Glycine max]
10 Hb_000029_380 0.2261448196 - - conserved hypothetical protein [Ricinus communis]
11 Hb_012049_030 0.2279108827 - - RNA polymerase beta subunit [Hevea brasiliensis]
12 Hb_005779_090 0.2291361064 transcription factor TF Family: ERF hypothetical protein POPTR_0014s05500g [Populus trichocarpa]
13 Hb_002014_070 0.2306309796 - - PREDICTED: probable chlorophyll(ide) b reductase NYC1, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_007595_050 0.2310339 - - hypothetical chloroplast RF2 [Hevea brasiliensis]
15 Hb_005228_060 0.2310897097 - - PREDICTED: uncharacterized protein LOC102604101 [Solanum tuberosum]
16 Hb_005332_150 0.2331642683 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46610 [Jatropha curcas]
17 Hb_004712_200 0.2336711869 - - hypothetical protein CICLE_v10010292mg [Citrus clementina]
18 Hb_001942_020 0.2366418433 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP16-3, chloroplastic [Jatropha curcas]
19 Hb_000035_340 0.2379990609 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001421_040 0.2396028532 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_003333_040 Hb_003333_040 Hb_013420_060 Hb_013420_060 Hb_003333_040--Hb_013420_060 Hb_001671_090 Hb_001671_090 Hb_003333_040--Hb_001671_090 Hb_007413_030 Hb_007413_030 Hb_003333_040--Hb_007413_030 Hb_032733_020 Hb_032733_020 Hb_003333_040--Hb_032733_020 Hb_053998_020 Hb_053998_020 Hb_003333_040--Hb_053998_020 Hb_114271_010 Hb_114271_010 Hb_003333_040--Hb_114271_010 Hb_000574_330 Hb_000574_330 Hb_013420_060--Hb_000574_330 Hb_004712_200 Hb_004712_200 Hb_013420_060--Hb_004712_200 Hb_013420_060--Hb_032733_020 Hb_011900_020 Hb_011900_020 Hb_013420_060--Hb_011900_020 Hb_000029_380 Hb_000029_380 Hb_013420_060--Hb_000029_380 Hb_001671_090--Hb_032733_020 Hb_001671_090--Hb_013420_060 Hb_001671_090--Hb_053998_020 Hb_001671_090--Hb_114271_010 Hb_000122_260 Hb_000122_260 Hb_001671_090--Hb_000122_260 Hb_063718_010 Hb_063718_010 Hb_007413_030--Hb_063718_010 Hb_005779_090 Hb_005779_090 Hb_007413_030--Hb_005779_090 Hb_002835_090 Hb_002835_090 Hb_007413_030--Hb_002835_090 Hb_010068_090 Hb_010068_090 Hb_007413_030--Hb_010068_090 Hb_000439_020 Hb_000439_020 Hb_007413_030--Hb_000439_020 Hb_032733_020--Hb_114271_010 Hb_087797_010 Hb_087797_010 Hb_032733_020--Hb_087797_010 Hb_001691_170 Hb_001691_170 Hb_032733_020--Hb_001691_170 Hb_002005_050 Hb_002005_050 Hb_032733_020--Hb_002005_050 Hb_002014_070 Hb_002014_070 Hb_053998_020--Hb_002014_070 Hb_062273_010 Hb_062273_010 Hb_053998_020--Hb_062273_010 Hb_041813_060 Hb_041813_060 Hb_053998_020--Hb_041813_060 Hb_001523_030 Hb_001523_030 Hb_053998_020--Hb_001523_030 Hb_102602_020 Hb_102602_020 Hb_053998_020--Hb_102602_020 Hb_032260_110 Hb_032260_110 Hb_114271_010--Hb_032260_110 Hb_004108_190 Hb_004108_190 Hb_114271_010--Hb_004108_190 Hb_129420_010 Hb_129420_010 Hb_114271_010--Hb_129420_010 Hb_114271_010--Hb_013420_060 Hb_114271_010--Hb_002005_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.101473 0.0393199 0.116688 0.0890521 0 0.0211472
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0407832 0.0211099 0.523164

CAGE analysis