Hb_010068_090

Information

Type -
Description -
Location Contig10068: 56873-58405
Sequence    

Annotation

kegg
ID pop:POPTR_0001s42670g
description hypothetical protein
nr
ID KDP39128.1
description hypothetical protein JCGZ_00885 [Jatropha curcas]
swissprot
ID Q8GT74
description NEP1-interacting protein 2 OS=Arabidopsis thaliana GN=NIP2 PE=1 SV=1
trembl
ID A0A067KVW6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00885 PE=4 SV=1
Gene Ontology
ID GO:0008270
description nep1-interacting 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00443: 56317-57000
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010068_090 0.0 - - hypothetical protein JCGZ_00885 [Jatropha curcas]
2 Hb_000029_330 0.1532419651 - - PREDICTED: protein TIC 62, chloroplastic [Jatropha curcas]
3 Hb_000317_180 0.164467896 - - PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Jatropha curcas]
4 Hb_011649_010 0.1648126403 transcription factor TF Family: Pseudo ARR-B sensory transduction histidine kinase, putative [Ricinus communis]
5 Hb_007595_050 0.1671222957 - - hypothetical chloroplast RF2 [Hevea brasiliensis]
6 Hb_002835_090 0.1715312831 - - RecName: Full=Elongation factor Tu, chloroplastic; Short=EF-Tu; Flags: Precursor [Glycine max]
7 Hb_001266_160 0.174357318 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
8 Hb_005063_060 0.1776849655 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105647704 [Jatropha curcas]
9 Hb_006816_040 0.1777483291 - - PREDICTED: pentatricopeptide repeat-containing protein At5g48910-like [Jatropha curcas]
10 Hb_003861_150 0.178208662 - - hypothetical protein JCGZ_15167 [Jatropha curcas]
11 Hb_000684_400 0.1841771465 - - PREDICTED: uncharacterized protein LOC105642159 [Jatropha curcas]
12 Hb_001377_060 0.1848525777 - - PREDICTED: pentatricopeptide repeat-containing protein At4g01030, mitochondrial [Jatropha curcas]
13 Hb_063718_010 0.1865545912 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000208_270 0.1866070862 - - PREDICTED: malate dehydrogenase [NADP], chloroplastic [Jatropha curcas]
15 Hb_001775_100 0.1867204485 - - PREDICTED: probable 2-carboxy-D-arabinitol-1-phosphatase [Jatropha curcas]
16 Hb_000089_140 0.186983896 - - PREDICTED: uncharacterized protein LOC105636682 isoform X2 [Jatropha curcas]
17 Hb_000069_370 0.1880693171 - - -
18 Hb_006472_040 0.1882859623 - - PREDICTED: inner membrane protein PPF-1, chloroplastic [Jatropha curcas]
19 Hb_005976_070 0.1902123626 - - triacylglycerol lipase, putative [Ricinus communis]
20 Hb_002477_020 0.1903635488 - - PREDICTED: uncharacterized protein LOC105631402 [Jatropha curcas]

Gene co-expression network

sample Hb_010068_090 Hb_010068_090 Hb_000029_330 Hb_000029_330 Hb_010068_090--Hb_000029_330 Hb_000317_180 Hb_000317_180 Hb_010068_090--Hb_000317_180 Hb_011649_010 Hb_011649_010 Hb_010068_090--Hb_011649_010 Hb_007595_050 Hb_007595_050 Hb_010068_090--Hb_007595_050 Hb_002835_090 Hb_002835_090 Hb_010068_090--Hb_002835_090 Hb_001266_160 Hb_001266_160 Hb_010068_090--Hb_001266_160 Hb_000029_330--Hb_001266_160 Hb_000029_330--Hb_000317_180 Hb_134949_010 Hb_134949_010 Hb_000029_330--Hb_134949_010 Hb_000029_330--Hb_002835_090 Hb_000898_090 Hb_000898_090 Hb_000029_330--Hb_000898_090 Hb_004979_050 Hb_004979_050 Hb_000029_330--Hb_004979_050 Hb_002477_020 Hb_002477_020 Hb_000317_180--Hb_002477_020 Hb_000089_140 Hb_000089_140 Hb_000317_180--Hb_000089_140 Hb_000803_170 Hb_000803_170 Hb_000317_180--Hb_000803_170 Hb_009296_030 Hb_009296_030 Hb_000317_180--Hb_009296_030 Hb_000317_180--Hb_001266_160 Hb_000118_090 Hb_000118_090 Hb_011649_010--Hb_000118_090 Hb_010721_020 Hb_010721_020 Hb_011649_010--Hb_010721_020 Hb_011649_010--Hb_000317_180 Hb_000193_220 Hb_000193_220 Hb_011649_010--Hb_000193_220 Hb_071079_020 Hb_071079_020 Hb_011649_010--Hb_071079_020 Hb_000045_050 Hb_000045_050 Hb_011649_010--Hb_000045_050 Hb_003861_150 Hb_003861_150 Hb_007595_050--Hb_003861_150 Hb_007595_050--Hb_002835_090 Hb_007595_020 Hb_007595_020 Hb_007595_050--Hb_007595_020 Hb_005228_060 Hb_005228_060 Hb_007595_050--Hb_005228_060 Hb_011900_020 Hb_011900_020 Hb_007595_050--Hb_011900_020 Hb_156850_020 Hb_156850_020 Hb_007595_050--Hb_156850_020 Hb_001377_060 Hb_001377_060 Hb_002835_090--Hb_001377_060 Hb_002835_090--Hb_011900_020 Hb_000359_070 Hb_000359_070 Hb_002835_090--Hb_000359_070 Hb_000069_370 Hb_000069_370 Hb_002835_090--Hb_000069_370 Hb_001266_160--Hb_000359_070 Hb_001266_160--Hb_004979_050 Hb_001266_160--Hb_134949_010 Hb_000359_160 Hb_000359_160 Hb_001266_160--Hb_000359_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.069797 0.400172 1.86304 1.37865 0.198842 0.8117
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0805846 0.126702 0.226153 0.0257727 5.76555

CAGE analysis