Hb_063718_010

Information

Type -
Description -
Location Contig63718: 560-1138
Sequence    

Annotation

kegg
ID rcu:RCOM_0568360
description hypothetical protein
nr
ID XP_002525588.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID A4GYV4
description Protein Ycf2 OS=Populus trichocarpa GN=ycf2-1 PE=3 SV=1
trembl
ID B9SHW9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0568360 PE=4 SV=1
Gene Ontology
ID GO:0009570
description ycf2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_063718_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004979_050 0.1515460731 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
3 Hb_000227_100 0.156236461 - - PREDICTED: uncharacterized protein LOC105631933 [Jatropha curcas]
4 Hb_007595_020 0.1568233756 - - maturase K [Hevea brasiliensis]
5 Hb_003944_010 0.1586493339 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
6 Hb_007595_050 0.1592682698 - - hypothetical chloroplast RF2 [Hevea brasiliensis]
7 Hb_005228_060 0.1664598581 - - PREDICTED: uncharacterized protein LOC102604101 [Solanum tuberosum]
8 Hb_002835_090 0.1673955362 - - RecName: Full=Elongation factor Tu, chloroplastic; Short=EF-Tu; Flags: Precursor [Glycine max]
9 Hb_000029_330 0.1686873497 - - PREDICTED: protein TIC 62, chloroplastic [Jatropha curcas]
10 Hb_011649_010 0.1693135432 transcription factor TF Family: Pseudo ARR-B sensory transduction histidine kinase, putative [Ricinus communis]
11 Hb_006816_040 0.1727110682 - - PREDICTED: pentatricopeptide repeat-containing protein At5g48910-like [Jatropha curcas]
12 Hb_007413_030 0.1754228515 - - kinase, putative [Ricinus communis]
13 Hb_001584_210 0.1757957471 - - PREDICTED: chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Jatropha curcas]
14 Hb_001266_160 0.1762627709 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
15 Hb_005779_090 0.1763003573 transcription factor TF Family: ERF hypothetical protein POPTR_0014s05500g [Populus trichocarpa]
16 Hb_000359_160 0.1765101492 - - PREDICTED: protein CAJ1 [Jatropha curcas]
17 Hb_001775_100 0.180642938 - - PREDICTED: probable 2-carboxy-D-arabinitol-1-phosphatase [Jatropha curcas]
18 Hb_000134_080 0.1810235909 - - synaptotagmin, putative [Ricinus communis]
19 Hb_005063_060 0.1811084689 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105647704 [Jatropha curcas]
20 Hb_000035_340 0.1817225038 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_063718_010 Hb_063718_010 Hb_004979_050 Hb_004979_050 Hb_063718_010--Hb_004979_050 Hb_000227_100 Hb_000227_100 Hb_063718_010--Hb_000227_100 Hb_007595_020 Hb_007595_020 Hb_063718_010--Hb_007595_020 Hb_003944_010 Hb_003944_010 Hb_063718_010--Hb_003944_010 Hb_007595_050 Hb_007595_050 Hb_063718_010--Hb_007595_050 Hb_005228_060 Hb_005228_060 Hb_063718_010--Hb_005228_060 Hb_000679_320 Hb_000679_320 Hb_004979_050--Hb_000679_320 Hb_000359_160 Hb_000359_160 Hb_004979_050--Hb_000359_160 Hb_008112_020 Hb_008112_020 Hb_004979_050--Hb_008112_020 Hb_001266_160 Hb_001266_160 Hb_004979_050--Hb_001266_160 Hb_001517_010 Hb_001517_010 Hb_004979_050--Hb_001517_010 Hb_006472_040 Hb_006472_040 Hb_004979_050--Hb_006472_040 Hb_012760_120 Hb_012760_120 Hb_000227_100--Hb_012760_120 Hb_000227_100--Hb_008112_020 Hb_000227_100--Hb_004979_050 Hb_003090_240 Hb_003090_240 Hb_000227_100--Hb_003090_240 Hb_001959_100 Hb_001959_100 Hb_000227_100--Hb_001959_100 Hb_000684_400 Hb_000684_400 Hb_000227_100--Hb_000684_400 Hb_068804_110 Hb_068804_110 Hb_007595_020--Hb_068804_110 Hb_000367_220 Hb_000367_220 Hb_007595_020--Hb_000367_220 Hb_002044_070 Hb_002044_070 Hb_007595_020--Hb_002044_070 Hb_007595_020--Hb_005228_060 Hb_000009_470 Hb_000009_470 Hb_007595_020--Hb_000009_470 Hb_029622_060 Hb_029622_060 Hb_007595_020--Hb_029622_060 Hb_156850_020 Hb_156850_020 Hb_003944_010--Hb_156850_020 Hb_003944_010--Hb_007595_020 Hb_010080_070 Hb_010080_070 Hb_003944_010--Hb_010080_070 Hb_005779_090 Hb_005779_090 Hb_003944_010--Hb_005779_090 Hb_007201_010 Hb_007201_010 Hb_003944_010--Hb_007201_010 Hb_185274_010 Hb_185274_010 Hb_003944_010--Hb_185274_010 Hb_003861_150 Hb_003861_150 Hb_007595_050--Hb_003861_150 Hb_002835_090 Hb_002835_090 Hb_007595_050--Hb_002835_090 Hb_007595_050--Hb_007595_020 Hb_007595_050--Hb_005228_060 Hb_011900_020 Hb_011900_020 Hb_007595_050--Hb_011900_020 Hb_007595_050--Hb_156850_020 Hb_005228_060--Hb_000367_220 Hb_028960_010 Hb_028960_010 Hb_005228_060--Hb_028960_010 Hb_005228_060--Hb_068804_110 Hb_000186_160 Hb_000186_160 Hb_005228_060--Hb_000186_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.208054 0.30471 1.01209 1.3028 0.221374 0.111521
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.106522 0 0.145614 0 4.99245

CAGE analysis