Hb_053998_020

Information

Type -
Description -
Location Contig53998: 4940-7712
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_053998_020 0.0 - - -
2 Hb_002014_070 0.1462826487 - - PREDICTED: probable chlorophyll(ide) b reductase NYC1, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_062273_010 0.1974962994 - - ATP synthase F0 subunit 9 [Chara vulgaris]
4 Hb_041813_060 0.199554149 - - ribosomal protein L10 (mitochondrion) [Ricinus communis]
5 Hb_003333_040 0.2007017985 - - ankyrin repeat-containing protein, putative [Ricinus communis]
6 Hb_001523_030 0.2033892263 - - protein binding protein, putative [Ricinus communis]
7 Hb_102602_020 0.2036665778 - - hypothetical protein B456_001G166300 [Gossypium raimondii]
8 Hb_013420_060 0.2103424824 - - NADH dehydrogenase subunit 7 [Nymphaea sp. Bergthorsson 0401]
9 Hb_072212_020 0.2185416258 - - hypothetical protein B456_001G162300 [Gossypium raimondii]
10 Hb_012092_080 0.2211702999 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15280-like [Malus domestica]
11 Hb_000574_330 0.2216648577 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
12 Hb_005154_090 0.2253649365 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
13 Hb_041813_010 0.2253986288 - - conserved hypothetical protein [Ricinus communis]
14 Hb_168031_020 0.2263842953 - - PREDICTED: uncharacterized protein LOC105646684 isoform X2 [Jatropha curcas]
15 Hb_005332_150 0.2289063834 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46610 [Jatropha curcas]
16 Hb_000029_380 0.2294236129 - - conserved hypothetical protein [Ricinus communis]
17 Hb_062192_060 0.2322381948 - - maturase (mitochondrion) [Hevea brasiliensis]
18 Hb_041813_040 0.2339602609 - - NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5, truncated - sugar beet mitochondrion (mitochondrion) [Beta vulgaris subsp. vulgaris]
19 Hb_062192_030 0.2341570596 - - ribosomal protein S1 (mitochondrion) [Hevea brasiliensis]
20 Hb_003125_100 0.2370320882 - - NAD(P)-binding Rossmann-fold superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_053998_020 Hb_053998_020 Hb_002014_070 Hb_002014_070 Hb_053998_020--Hb_002014_070 Hb_062273_010 Hb_062273_010 Hb_053998_020--Hb_062273_010 Hb_041813_060 Hb_041813_060 Hb_053998_020--Hb_041813_060 Hb_003333_040 Hb_003333_040 Hb_053998_020--Hb_003333_040 Hb_001523_030 Hb_001523_030 Hb_053998_020--Hb_001523_030 Hb_102602_020 Hb_102602_020 Hb_053998_020--Hb_102602_020 Hb_002014_070--Hb_041813_060 Hb_004218_300 Hb_004218_300 Hb_002014_070--Hb_004218_300 Hb_002972_030 Hb_002972_030 Hb_002014_070--Hb_002972_030 Hb_005332_150 Hb_005332_150 Hb_002014_070--Hb_005332_150 Hb_000029_380 Hb_000029_380 Hb_002014_070--Hb_000029_380 Hb_072212_020 Hb_072212_020 Hb_062273_010--Hb_072212_020 Hb_042463_020 Hb_042463_020 Hb_062273_010--Hb_042463_020 Hb_034168_070 Hb_034168_070 Hb_062273_010--Hb_034168_070 Hb_062192_030 Hb_062192_030 Hb_062273_010--Hb_062192_030 Hb_104735_020 Hb_104735_020 Hb_062273_010--Hb_104735_020 Hb_189099_020 Hb_189099_020 Hb_062273_010--Hb_189099_020 Hb_041813_060--Hb_000029_380 Hb_000574_330 Hb_000574_330 Hb_041813_060--Hb_000574_330 Hb_003125_100 Hb_003125_100 Hb_041813_060--Hb_003125_100 Hb_005154_090 Hb_005154_090 Hb_041813_060--Hb_005154_090 Hb_041813_040 Hb_041813_040 Hb_041813_060--Hb_041813_040 Hb_001295_080 Hb_001295_080 Hb_041813_060--Hb_001295_080 Hb_013420_060 Hb_013420_060 Hb_003333_040--Hb_013420_060 Hb_001671_090 Hb_001671_090 Hb_003333_040--Hb_001671_090 Hb_007413_030 Hb_007413_030 Hb_003333_040--Hb_007413_030 Hb_032733_020 Hb_032733_020 Hb_003333_040--Hb_032733_020 Hb_114271_010 Hb_114271_010 Hb_003333_040--Hb_114271_010 Hb_012092_080 Hb_012092_080 Hb_001523_030--Hb_012092_080 Hb_062192_060 Hb_062192_060 Hb_001523_030--Hb_062192_060 Hb_001282_030 Hb_001282_030 Hb_001523_030--Hb_001282_030 Hb_013420_040 Hb_013420_040 Hb_001523_030--Hb_013420_040 Hb_097021_010 Hb_097021_010 Hb_001523_030--Hb_097021_010 Hb_102602_020--Hb_041813_040 Hb_006405_040 Hb_006405_040 Hb_102602_020--Hb_006405_040 Hb_001385_070 Hb_001385_070 Hb_102602_020--Hb_001385_070 Hb_127552_050 Hb_127552_050 Hb_102602_020--Hb_127552_050 Hb_000820_100 Hb_000820_100 Hb_102602_020--Hb_000820_100 Hb_007543_020 Hb_007543_020 Hb_102602_020--Hb_007543_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.202219 0.374372 0.224025 0.258901 0 0.148733
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.412949 0.209461 2.72901

CAGE analysis