Hb_041813_060

Information

Type -
Description -
Location Contig41813: 32696-33148
Sequence    

Annotation

kegg
ID rcu:RCOM_Mp11
description rpl10; ribosomal protein L10
nr
ID YP_004237256.1
description ribosomal protein L10 (mitochondrion) [Ricinus communis]
swissprot
ID P38450
description Uncharacterized mitochondrial protein ymf1 OS=Marchantia polymorpha GN=YMF1 PE=4 SV=1
trembl
ID E9P294
description Ribosomal protein L10 OS=Ricinus communis GN=rpl10 PE=4 SV=1
Gene Ontology
ID GO:0005739
description ribosomal protein l10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41364: 32712-33331
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_041813_060 0.0 - - ribosomal protein L10 (mitochondrion) [Ricinus communis]
2 Hb_000029_380 0.148200765 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000574_330 0.1578717422 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
4 Hb_003125_100 0.1596469454 - - NAD(P)-binding Rossmann-fold superfamily protein [Theobroma cacao]
5 Hb_005154_090 0.1611248558 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
6 Hb_041813_040 0.1628869818 - - NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5, truncated - sugar beet mitochondrion (mitochondrion) [Beta vulgaris subsp. vulgaris]
7 Hb_001295_080 0.1692441467 - - Protein KES1, putative [Ricinus communis]
8 Hb_004374_090 0.1699235078 transcription factor TF Family: HB PREDICTED: homeobox protein BEL1 homolog [Populus euphratica]
9 Hb_003291_030 0.1766274721 - - Gag-pol protein, putative [Solanum demissum]
10 Hb_001793_040 0.1808951719 - - hypothetical protein VITISV_006810 [Vitis vinifera]
11 Hb_001146_030 0.1811457616 - - cytochrome P450, putative [Ricinus communis]
12 Hb_093388_010 0.1814261791 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
13 Hb_003414_040 0.1814997165 - - hypothetical protein VITISV_016691 [Vitis vinifera]
14 Hb_054865_040 0.1819837183 - - PREDICTED: auxin-induced protein 15A [Jatropha curcas]
15 Hb_011649_030 0.1825927711 - - hypothetical protein [Vitis hybrid cultivar]
16 Hb_079526_010 0.1829612148 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8 [Populus euphratica]
17 Hb_000441_080 0.184927649 - - calmodulin binding protein, putative [Ricinus communis]
18 Hb_077151_010 0.1858602011 - - ankyrin repeat protein [Bruguiera gymnorhiza]
19 Hb_001385_070 0.1860534632 - - hypothetical protein VITISV_019194 [Vitis vinifera]
20 Hb_000139_030 0.1871171728 - - PREDICTED: uncharacterized protein LOC101254423 [Solanum lycopersicum]

Gene co-expression network

sample Hb_041813_060 Hb_041813_060 Hb_000029_380 Hb_000029_380 Hb_041813_060--Hb_000029_380 Hb_000574_330 Hb_000574_330 Hb_041813_060--Hb_000574_330 Hb_003125_100 Hb_003125_100 Hb_041813_060--Hb_003125_100 Hb_005154_090 Hb_005154_090 Hb_041813_060--Hb_005154_090 Hb_041813_040 Hb_041813_040 Hb_041813_060--Hb_041813_040 Hb_001295_080 Hb_001295_080 Hb_041813_060--Hb_001295_080 Hb_012940_020 Hb_012940_020 Hb_000029_380--Hb_012940_020 Hb_068804_110 Hb_068804_110 Hb_000029_380--Hb_068804_110 Hb_005228_060 Hb_005228_060 Hb_000029_380--Hb_005228_060 Hb_156850_020 Hb_156850_020 Hb_000029_380--Hb_156850_020 Hb_185274_020 Hb_185274_020 Hb_000029_380--Hb_185274_020 Hb_007595_050 Hb_007595_050 Hb_000029_380--Hb_007595_050 Hb_000574_330--Hb_041813_040 Hb_127552_050 Hb_127552_050 Hb_000574_330--Hb_127552_050 Hb_011649_030 Hb_011649_030 Hb_000574_330--Hb_011649_030 Hb_001385_070 Hb_001385_070 Hb_000574_330--Hb_001385_070 Hb_000123_340 Hb_000123_340 Hb_000574_330--Hb_000123_340 Hb_004109_130 Hb_004109_130 Hb_000574_330--Hb_004109_130 Hb_003125_100--Hb_185274_020 Hb_001083_040 Hb_001083_040 Hb_003125_100--Hb_001083_040 Hb_189099_020 Hb_189099_020 Hb_003125_100--Hb_189099_020 Hb_034168_010 Hb_034168_010 Hb_003125_100--Hb_034168_010 Hb_062273_010 Hb_062273_010 Hb_003125_100--Hb_062273_010 Hb_003375_050 Hb_003375_050 Hb_005154_090--Hb_003375_050 Hb_062192_060 Hb_062192_060 Hb_005154_090--Hb_062192_060 Hb_041813_050 Hb_041813_050 Hb_005154_090--Hb_041813_050 Hb_062192_030 Hb_062192_030 Hb_005154_090--Hb_062192_030 Hb_005154_090--Hb_041813_040 Hb_041813_040--Hb_011649_030 Hb_102602_020 Hb_102602_020 Hb_041813_040--Hb_102602_020 Hb_000352_060 Hb_000352_060 Hb_041813_040--Hb_000352_060 Hb_041813_040--Hb_127552_050 Hb_067472_010 Hb_067472_010 Hb_041813_040--Hb_067472_010 Hb_001146_030 Hb_001146_030 Hb_001295_080--Hb_001146_030 Hb_002620_040 Hb_002620_040 Hb_001295_080--Hb_002620_040 Hb_000139_030 Hb_000139_030 Hb_001295_080--Hb_000139_030 Hb_010021_040 Hb_010021_040 Hb_001295_080--Hb_010021_040 Hb_057880_020 Hb_057880_020 Hb_001295_080--Hb_057880_020 Hb_000462_160 Hb_000462_160 Hb_001295_080--Hb_000462_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.39888 0.421984 0.545654 0 0.148733
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.206475 0.366556 4.54836

CAGE analysis