Hb_002620_040

Information

Type -
Description -
Location Contig2620: 101044-104153
Sequence    

Annotation

kegg
ID pop:POPTR_0004s18100g
description POPTRDRAFT_800858; kinase family protein
nr
ID XP_012081775.1
description PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
swissprot
ID Q9ZUE0
description Proline-rich receptor-like protein kinase PERK12 OS=Arabidopsis thaliana GN=PERK12 PE=2 SV=2
trembl
ID A0A067K3M9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18820 PE=4 SV=1
Gene Ontology
ID GO:0004672
description kinase protein with adenine nucleotide alpha hydrolases-like isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27410: 102693-102953
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002620_040 0.0 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
2 Hb_000462_160 0.0707282489 - - UDP-glucosyltransferase, putative [Ricinus communis]
3 Hb_057880_020 0.0773322017 - - PREDICTED: receptor-like protein kinase HSL1, partial [Jatropha curcas]
4 Hb_000139_030 0.0925249609 - - PREDICTED: uncharacterized protein LOC101254423 [Solanum lycopersicum]
5 Hb_001295_080 0.1036683759 - - Protein KES1, putative [Ricinus communis]
6 Hb_001459_020 0.1045508503 - - ankyrin repeat protein [Bruguiera gymnorhiza]
7 Hb_002188_150 0.1088869574 - - conserved hypothetical protein [Ricinus communis]
8 Hb_080048_030 0.1122018816 desease resistance Gene Name: NB-ARC Leucine-rich repeat containing protein [Theobroma cacao]
9 Hb_010021_040 0.116772109 - - PREDICTED: uncharacterized protein LOC105630811 [Jatropha curcas]
10 Hb_000920_340 0.1207673975 - - o-methyltransferase, putative [Ricinus communis]
11 Hb_169492_010 0.121654707 - - PREDICTED: expansin-like B1 [Jatropha curcas]
12 Hb_011537_130 0.1223327814 - - unnamed protein product [Vitis vinifera]
13 Hb_005194_050 0.1233212094 transcription factor TF Family: GRAS SCL domain class transcription factor [Theobroma cacao]
14 Hb_020367_040 0.1233619818 - - hypothetical protein JCGZ_01061 [Jatropha curcas]
15 Hb_005675_030 0.1237463885 - - PREDICTED: 3-ketoacyl-CoA synthase 6 [Jatropha curcas]
16 Hb_005092_070 0.1244861414 - - Oligopeptide transporter, putative [Ricinus communis]
17 Hb_001146_030 0.1246649673 - - cytochrome P450, putative [Ricinus communis]
18 Hb_048755_030 0.1255899875 - - Periplasmic beta-glucosidase precursor, putative [Ricinus communis]
19 Hb_018202_040 0.1286144524 - - PREDICTED: phosphoenolpyruvate/phosphate translocator 2, chloroplastic-like [Jatropha curcas]
20 Hb_000101_340 0.1303634726 - - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Ricinus communis]

Gene co-expression network

sample Hb_002620_040 Hb_002620_040 Hb_000462_160 Hb_000462_160 Hb_002620_040--Hb_000462_160 Hb_057880_020 Hb_057880_020 Hb_002620_040--Hb_057880_020 Hb_000139_030 Hb_000139_030 Hb_002620_040--Hb_000139_030 Hb_001295_080 Hb_001295_080 Hb_002620_040--Hb_001295_080 Hb_001459_020 Hb_001459_020 Hb_002620_040--Hb_001459_020 Hb_002188_150 Hb_002188_150 Hb_002620_040--Hb_002188_150 Hb_000462_160--Hb_057880_020 Hb_020367_040 Hb_020367_040 Hb_000462_160--Hb_020367_040 Hb_000462_160--Hb_000139_030 Hb_048755_030 Hb_048755_030 Hb_000462_160--Hb_048755_030 Hb_002226_090 Hb_002226_090 Hb_000462_160--Hb_002226_090 Hb_057880_020--Hb_020367_040 Hb_057880_020--Hb_000139_030 Hb_057880_020--Hb_048755_030 Hb_066293_010 Hb_066293_010 Hb_057880_020--Hb_066293_010 Hb_001579_050 Hb_001579_050 Hb_000139_030--Hb_001579_050 Hb_000081_110 Hb_000081_110 Hb_000139_030--Hb_000081_110 Hb_000139_030--Hb_020367_040 Hb_000139_030--Hb_048755_030 Hb_001146_030 Hb_001146_030 Hb_001295_080--Hb_001146_030 Hb_001295_080--Hb_000139_030 Hb_010021_040 Hb_010021_040 Hb_001295_080--Hb_010021_040 Hb_001295_080--Hb_057880_020 Hb_001295_080--Hb_000462_160 Hb_007718_040 Hb_007718_040 Hb_001459_020--Hb_007718_040 Hb_001459_020--Hb_057880_020 Hb_089305_040 Hb_089305_040 Hb_001459_020--Hb_089305_040 Hb_000920_340 Hb_000920_340 Hb_001459_020--Hb_000920_340 Hb_149345_010 Hb_149345_010 Hb_001459_020--Hb_149345_010 Hb_003622_050 Hb_003622_050 Hb_002188_150--Hb_003622_050 Hb_169492_010 Hb_169492_010 Hb_002188_150--Hb_169492_010 Hb_001053_050 Hb_001053_050 Hb_002188_150--Hb_001053_050 Hb_001775_010 Hb_001775_010 Hb_002188_150--Hb_001775_010 Hb_077976_010 Hb_077976_010 Hb_002188_150--Hb_077976_010 Hb_002188_150--Hb_001146_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00844531 0.686962 0.760347 1.74838 0.00790499 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0191755 0 0 0.299759 8.74024

CAGE analysis