Hb_001053_050

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig1053: 38674-40446
Sequence    

Annotation

kegg
ID vvi:100241394
description putative disease resistance protein RGA3
nr
ID XP_010659351.1
description PREDICTED: putative disease resistance protein RGA3 [Vitis vinifera]
swissprot
ID Q7XA39
description Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1
trembl
ID A5BBK5
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_017638 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001053_050 0.0 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Vitis vinifera]
2 Hb_003622_050 0.082335543 - - PREDICTED: respiratory burst oxidase homolog protein A-like [Jatropha curcas]
3 Hb_007101_090 0.0836985961 - - PREDICTED: protein ALTERED XYLOGLUCAN 4 [Jatropha curcas]
4 Hb_001775_010 0.0920098522 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000645_270 0.0923077218 - - PREDICTED: uncharacterized protein LOC105122837 isoform X2 [Populus euphratica]
6 Hb_002188_150 0.0958976456 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000768_080 0.1016225942 - - Mlo protein [Hevea brasiliensis]
8 Hb_000983_200 0.10249785 - - PREDICTED: uncharacterized protein LOC105633924 [Jatropha curcas]
9 Hb_001999_330 0.104722473 - - hypothetical protein PRUPE_ppa022262mg, partial [Prunus persica]
10 Hb_031194_020 0.104808431 - - BnaCnng13030D [Brassica napus]
11 Hb_002600_110 0.1049305838 - - hypothetical protein POPTR_0004s10540g [Populus trichocarpa]
12 Hb_010021_040 0.1050754374 - - PREDICTED: uncharacterized protein LOC105630811 [Jatropha curcas]
13 Hb_001610_100 0.1060962655 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
14 Hb_169492_010 0.1070654434 - - PREDICTED: expansin-like B1 [Jatropha curcas]
15 Hb_001080_290 0.1074933122 - - PSI reaction center subunit II [Citrus sinensis]
16 Hb_001146_030 0.1082558701 - - cytochrome P450, putative [Ricinus communis]
17 Hb_003253_030 0.1109979143 - - lysosomal pro-X carboxypeptidase, putative [Ricinus communis]
18 Hb_000844_060 0.1122823947 - - PREDICTED: uncharacterized protein LOC105633706 [Jatropha curcas]
19 Hb_003947_020 0.1137454749 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
20 Hb_001085_200 0.1140476225 transcription factor TF Family: ARID PREDICTED: high mobility group B protein 15 [Jatropha curcas]

Gene co-expression network

sample Hb_001053_050 Hb_001053_050 Hb_003622_050 Hb_003622_050 Hb_001053_050--Hb_003622_050 Hb_007101_090 Hb_007101_090 Hb_001053_050--Hb_007101_090 Hb_001775_010 Hb_001775_010 Hb_001053_050--Hb_001775_010 Hb_000645_270 Hb_000645_270 Hb_001053_050--Hb_000645_270 Hb_002188_150 Hb_002188_150 Hb_001053_050--Hb_002188_150 Hb_000768_080 Hb_000768_080 Hb_001053_050--Hb_000768_080 Hb_003622_050--Hb_000645_270 Hb_031194_020 Hb_031194_020 Hb_003622_050--Hb_031194_020 Hb_000844_060 Hb_000844_060 Hb_003622_050--Hb_000844_060 Hb_001080_290 Hb_001080_290 Hb_003622_050--Hb_001080_290 Hb_002600_110 Hb_002600_110 Hb_003622_050--Hb_002600_110 Hb_003622_050--Hb_002188_150 Hb_001001_130 Hb_001001_130 Hb_007101_090--Hb_001001_130 Hb_052139_010 Hb_052139_010 Hb_007101_090--Hb_052139_010 Hb_007101_090--Hb_000645_270 Hb_001856_290 Hb_001856_290 Hb_007101_090--Hb_001856_290 Hb_001999_330 Hb_001999_330 Hb_007101_090--Hb_001999_330 Hb_002010_010 Hb_002010_010 Hb_007101_090--Hb_002010_010 Hb_001775_010--Hb_000768_080 Hb_008864_050 Hb_008864_050 Hb_001775_010--Hb_008864_050 Hb_001775_010--Hb_001080_290 Hb_010021_040 Hb_010021_040 Hb_001775_010--Hb_010021_040 Hb_001775_010--Hb_002600_110 Hb_001951_050 Hb_001951_050 Hb_001775_010--Hb_001951_050 Hb_000645_270--Hb_031194_020 Hb_003947_020 Hb_003947_020 Hb_000645_270--Hb_003947_020 Hb_000645_270--Hb_052139_010 Hb_009095_020 Hb_009095_020 Hb_000645_270--Hb_009095_020 Hb_169492_010 Hb_169492_010 Hb_002188_150--Hb_169492_010 Hb_002188_150--Hb_001775_010 Hb_077976_010 Hb_077976_010 Hb_002188_150--Hb_077976_010 Hb_001146_030 Hb_001146_030 Hb_002188_150--Hb_001146_030 Hb_000768_080--Hb_008864_050 Hb_000768_080--Hb_002600_110 Hb_000768_080--Hb_010021_040 Hb_000768_080--Hb_001080_290 Hb_002445_020 Hb_002445_020 Hb_000768_080--Hb_002445_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0600633 0.312706 0.48529 0.0333649 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0728274 3.63527

CAGE analysis