Hb_077976_010

Information

Type -
Description -
Location Contig77976: 2-907
Sequence    

Annotation

kegg
ID pmum:103334241
description G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410
nr
ID XP_011015680.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
swissprot
ID Q9ZT07
description G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 OS=Arabidopsis thaliana GN=RKS1 PE=3 SV=3
trembl
ID A0A059CDU0
description Serine/threonine-protein kinase OS=Eucalyptus grandis GN=EUGRSUZ_D00910 PE=3 SV=1
Gene Ontology
ID GO:0016301
description g-type lectin s-receptor-like serine threonine-protein kinase at1g11410

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_077976_010 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
2 Hb_042123_010 0.0454110225 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Populus euphratica]
3 Hb_001097_110 0.0534033167 - - gibberellin 20-oxidase, putative [Ricinus communis]
4 Hb_001140_110 0.0564854953 - - hypothetical protein JCGZ_26123 [Jatropha curcas]
5 Hb_001080_290 0.0578301428 - - PSI reaction center subunit II [Citrus sinensis]
6 Hb_001951_050 0.0587850123 - - chlorophyll A/B binding protein, putative [Ricinus communis]
7 Hb_000815_120 0.0667917169 - - calcium ion binding protein, putative [Ricinus communis]
8 Hb_007534_080 0.068093558 - - d-3-phosphoglycerate dehydrogenase, putative [Ricinus communis]
9 Hb_003058_150 0.0708359541 - - PREDICTED: gibberellin 3-beta-dioxygenase 1-like [Jatropha curcas]
10 Hb_003805_110 0.0714380036 - - PREDICTED: laccase-11-like [Jatropha curcas]
11 Hb_004818_010 0.0720238793 - - hypothetical protein JCGZ_13628 [Jatropha curcas]
12 Hb_005474_070 0.0794870791 - - hypothetical protein JCGZ_10579 [Jatropha curcas]
13 Hb_029584_020 0.0820193367 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000940_120 0.0829444612 - - PREDICTED: proline-rich protein 4-like isoform X2 [Pyrus x bretschneideri]
15 Hb_000704_020 0.083349461 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000530_060 0.0835133967 - - -
17 Hb_004143_080 0.0840542957 - - PREDICTED: protein ECERIFERUM 1 [Jatropha curcas]
18 Hb_000140_040 0.0863966632 - - PREDICTED: UDP-glycosyltransferase 79B6-like [Jatropha curcas]
19 Hb_000504_220 0.086770053 - - hypothetical protein JCGZ_10249 [Jatropha curcas]
20 Hb_003093_050 0.0869485492 - - PREDICTED: uncharacterized protein LOC105641023 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_077976_010 Hb_077976_010 Hb_042123_010 Hb_042123_010 Hb_077976_010--Hb_042123_010 Hb_001097_110 Hb_001097_110 Hb_077976_010--Hb_001097_110 Hb_001140_110 Hb_001140_110 Hb_077976_010--Hb_001140_110 Hb_001080_290 Hb_001080_290 Hb_077976_010--Hb_001080_290 Hb_001951_050 Hb_001951_050 Hb_077976_010--Hb_001951_050 Hb_000815_120 Hb_000815_120 Hb_077976_010--Hb_000815_120 Hb_042123_010--Hb_001097_110 Hb_042123_010--Hb_001951_050 Hb_042123_010--Hb_001140_110 Hb_042123_010--Hb_001080_290 Hb_003058_150 Hb_003058_150 Hb_042123_010--Hb_003058_150 Hb_001097_110--Hb_001140_110 Hb_001097_110--Hb_001951_050 Hb_000140_040 Hb_000140_040 Hb_001097_110--Hb_000140_040 Hb_003805_110 Hb_003805_110 Hb_001097_110--Hb_003805_110 Hb_007534_080 Hb_007534_080 Hb_001097_110--Hb_007534_080 Hb_001097_110--Hb_003058_150 Hb_001140_110--Hb_001951_050 Hb_001140_110--Hb_003058_150 Hb_001140_110--Hb_003805_110 Hb_001140_110--Hb_001080_290 Hb_000940_120 Hb_000940_120 Hb_001140_110--Hb_000940_120 Hb_001080_290--Hb_001951_050 Hb_001775_010 Hb_001775_010 Hb_001080_290--Hb_001775_010 Hb_001080_290--Hb_001097_110 Hb_004143_080 Hb_004143_080 Hb_001951_050--Hb_004143_080 Hb_001951_050--Hb_000815_120 Hb_000815_120--Hb_004143_080 Hb_004818_010 Hb_004818_010 Hb_000815_120--Hb_004818_010 Hb_000704_020 Hb_000704_020 Hb_000815_120--Hb_000704_020 Hb_002301_070 Hb_002301_070 Hb_000815_120--Hb_002301_070 Hb_003093_050 Hb_003093_050 Hb_000815_120--Hb_003093_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0251585 0.934001 1.62289 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0573956 0 0 0.0181986 8.15583

CAGE analysis