Hb_002188_150

Information

Type -
Description -
Location Contig2188: 178430-180334
Sequence    

Annotation

kegg
ID rcu:RCOM_1438930
description hypothetical protein
nr
ID XP_002512705.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SD53
description UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=2 SV=1
trembl
ID B9RG36
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1438930 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002188_150 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003622_050 0.0797393745 - - PREDICTED: respiratory burst oxidase homolog protein A-like [Jatropha curcas]
3 Hb_169492_010 0.0857251906 - - PREDICTED: expansin-like B1 [Jatropha curcas]
4 Hb_001053_050 0.0958976456 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Vitis vinifera]
5 Hb_001775_010 0.1038652904 - - conserved hypothetical protein [Ricinus communis]
6 Hb_077976_010 0.1067684815 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
7 Hb_001146_030 0.1082540037 - - cytochrome P450, putative [Ricinus communis]
8 Hb_000768_080 0.1083119394 - - Mlo protein [Hevea brasiliensis]
9 Hb_001080_290 0.1085229003 - - PSI reaction center subunit II [Citrus sinensis]
10 Hb_002620_040 0.1088869574 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
11 Hb_001085_200 0.110026144 transcription factor TF Family: ARID PREDICTED: high mobility group B protein 15 [Jatropha curcas]
12 Hb_042123_010 0.1111285216 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Populus euphratica]
13 Hb_010021_040 0.1117800083 - - PREDICTED: uncharacterized protein LOC105630811 [Jatropha curcas]
14 Hb_003253_030 0.1124834031 - - lysosomal pro-X carboxypeptidase, putative [Ricinus communis]
15 Hb_000844_060 0.1156348391 - - PREDICTED: uncharacterized protein LOC105633706 [Jatropha curcas]
16 Hb_000645_270 0.1163559914 - - PREDICTED: uncharacterized protein LOC105122837 isoform X2 [Populus euphratica]
17 Hb_002600_110 0.1164272907 - - hypothetical protein POPTR_0004s10540g [Populus trichocarpa]
18 Hb_007101_090 0.1165314069 - - PREDICTED: protein ALTERED XYLOGLUCAN 4 [Jatropha curcas]
19 Hb_080048_030 0.1190645801 desease resistance Gene Name: NB-ARC Leucine-rich repeat containing protein [Theobroma cacao]
20 Hb_000101_340 0.1201201662 - - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Ricinus communis]

Gene co-expression network

sample Hb_002188_150 Hb_002188_150 Hb_003622_050 Hb_003622_050 Hb_002188_150--Hb_003622_050 Hb_169492_010 Hb_169492_010 Hb_002188_150--Hb_169492_010 Hb_001053_050 Hb_001053_050 Hb_002188_150--Hb_001053_050 Hb_001775_010 Hb_001775_010 Hb_002188_150--Hb_001775_010 Hb_077976_010 Hb_077976_010 Hb_002188_150--Hb_077976_010 Hb_001146_030 Hb_001146_030 Hb_002188_150--Hb_001146_030 Hb_000645_270 Hb_000645_270 Hb_003622_050--Hb_000645_270 Hb_031194_020 Hb_031194_020 Hb_003622_050--Hb_031194_020 Hb_000844_060 Hb_000844_060 Hb_003622_050--Hb_000844_060 Hb_001080_290 Hb_001080_290 Hb_003622_050--Hb_001080_290 Hb_002600_110 Hb_002600_110 Hb_003622_050--Hb_002600_110 Hb_080048_030 Hb_080048_030 Hb_169492_010--Hb_080048_030 Hb_018202_040 Hb_018202_040 Hb_169492_010--Hb_018202_040 Hb_005675_030 Hb_005675_030 Hb_169492_010--Hb_005675_030 Hb_018487_040 Hb_018487_040 Hb_169492_010--Hb_018487_040 Hb_011537_130 Hb_011537_130 Hb_169492_010--Hb_011537_130 Hb_001951_050 Hb_001951_050 Hb_169492_010--Hb_001951_050 Hb_001053_050--Hb_003622_050 Hb_007101_090 Hb_007101_090 Hb_001053_050--Hb_007101_090 Hb_001053_050--Hb_001775_010 Hb_001053_050--Hb_000645_270 Hb_000768_080 Hb_000768_080 Hb_001053_050--Hb_000768_080 Hb_001775_010--Hb_000768_080 Hb_008864_050 Hb_008864_050 Hb_001775_010--Hb_008864_050 Hb_001775_010--Hb_001080_290 Hb_010021_040 Hb_010021_040 Hb_001775_010--Hb_010021_040 Hb_001775_010--Hb_002600_110 Hb_001775_010--Hb_001951_050 Hb_042123_010 Hb_042123_010 Hb_077976_010--Hb_042123_010 Hb_001097_110 Hb_001097_110 Hb_077976_010--Hb_001097_110 Hb_001140_110 Hb_001140_110 Hb_077976_010--Hb_001140_110 Hb_077976_010--Hb_001080_290 Hb_077976_010--Hb_001951_050 Hb_000815_120 Hb_000815_120 Hb_077976_010--Hb_000815_120 Hb_001295_080 Hb_001295_080 Hb_001146_030--Hb_001295_080 Hb_001085_200 Hb_001085_200 Hb_001146_030--Hb_001085_200 Hb_001146_030--Hb_000844_060 Hb_001146_030--Hb_001053_050 Hb_054865_040 Hb_054865_040 Hb_001146_030--Hb_054865_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0736727 0.328668 0.629263 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0361384 0 0 0.090952 3.54821

CAGE analysis