Hb_000977_170

Information

Type -
Description -
Location Contig977: 143442-146328
Sequence    

Annotation

kegg
ID rcu:RCOM_1076790
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002514778.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID P0C896
description Pentatricopeptide repeat-containing protein At3g02650, mitochondrial OS=Arabidopsis thaliana GN=At3g02650 PE=2 SV=1
trembl
ID B9RM09
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1076790 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000977_170 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_119044_010 0.157501892 - - PREDICTED: stomatal closure-related actin-binding protein 2-like [Jatropha curcas]
3 Hb_000045_050 0.1596740273 - - PREDICTED: probable zinc metalloprotease EGY2, chloroplastic [Jatropha curcas]
4 Hb_058620_080 0.159776552 - - PREDICTED: phosphoglycerate kinase, chloroplastic [Jatropha curcas]
5 Hb_003948_020 0.1679354723 - - PREDICTED: transmembrane protein 41B [Jatropha curcas]
6 Hb_000516_080 0.1685733248 - - hypothetical protein POPTR_0010s24810g [Populus trichocarpa]
7 Hb_005181_120 0.171000172 - - PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_002028_180 0.1717602189 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
9 Hb_000544_080 0.1730680687 - - PREDICTED: uncharacterized protein LOC105631062 isoform X3 [Jatropha curcas]
10 Hb_000803_170 0.1734387849 - - PREDICTED: uncharacterized protein LOC105648312 [Jatropha curcas]
11 Hb_172426_060 0.1740507966 - - PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Jatropha curcas]
12 Hb_173660_010 0.1747172255 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Malus domestica]
13 Hb_000108_150 0.1757065183 - - alpha/beta hydrolase, putative [Ricinus communis]
14 Hb_000061_250 0.1760891287 - - hypothetical protein JCGZ_11665 [Jatropha curcas]
15 Hb_003549_140 0.1761699457 - - Thylakoid lumenal 21.5 kDa protein, chloroplast precursor, putative [Ricinus communis]
16 Hb_001959_090 0.1762910048 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
17 Hb_000118_090 0.1764083849 - - Glutamyl-tRNA reductase 1, chloroplast precursor, putative [Ricinus communis]
18 Hb_071079_020 0.1768024494 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
19 Hb_003786_080 0.1772589881 - - electron transporter, putative [Ricinus communis]
20 Hb_032631_030 0.1774808035 - - phosphatidic acid phosphatase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000977_170 Hb_000977_170 Hb_119044_010 Hb_119044_010 Hb_000977_170--Hb_119044_010 Hb_000045_050 Hb_000045_050 Hb_000977_170--Hb_000045_050 Hb_058620_080 Hb_058620_080 Hb_000977_170--Hb_058620_080 Hb_003948_020 Hb_003948_020 Hb_000977_170--Hb_003948_020 Hb_000516_080 Hb_000516_080 Hb_000977_170--Hb_000516_080 Hb_005181_120 Hb_005181_120 Hb_000977_170--Hb_005181_120 Hb_002028_180 Hb_002028_180 Hb_119044_010--Hb_002028_180 Hb_001227_070 Hb_001227_070 Hb_119044_010--Hb_001227_070 Hb_002817_040 Hb_002817_040 Hb_119044_010--Hb_002817_040 Hb_001544_050 Hb_001544_050 Hb_119044_010--Hb_001544_050 Hb_001017_130 Hb_001017_130 Hb_119044_010--Hb_001017_130 Hb_000984_150 Hb_000984_150 Hb_119044_010--Hb_000984_150 Hb_000061_250 Hb_000061_250 Hb_000045_050--Hb_000061_250 Hb_000108_150 Hb_000108_150 Hb_000045_050--Hb_000108_150 Hb_000544_080 Hb_000544_080 Hb_000045_050--Hb_000544_080 Hb_000045_050--Hb_003948_020 Hb_002811_250 Hb_002811_250 Hb_000045_050--Hb_002811_250 Hb_000045_050--Hb_005181_120 Hb_058620_080--Hb_000544_080 Hb_009393_130 Hb_009393_130 Hb_058620_080--Hb_009393_130 Hb_010557_010 Hb_010557_010 Hb_058620_080--Hb_010557_010 Hb_000803_170 Hb_000803_170 Hb_058620_080--Hb_000803_170 Hb_011519_050 Hb_011519_050 Hb_058620_080--Hb_011519_050 Hb_007803_040 Hb_007803_040 Hb_058620_080--Hb_007803_040 Hb_002411_100 Hb_002411_100 Hb_003948_020--Hb_002411_100 Hb_003664_030 Hb_003664_030 Hb_003948_020--Hb_003664_030 Hb_003948_020--Hb_010557_010 Hb_003948_020--Hb_000061_250 Hb_000264_280 Hb_000264_280 Hb_003948_020--Hb_000264_280 Hb_000516_080--Hb_005181_120 Hb_010098_040 Hb_010098_040 Hb_000516_080--Hb_010098_040 Hb_007982_040 Hb_007982_040 Hb_000516_080--Hb_007982_040 Hb_000679_080 Hb_000679_080 Hb_000516_080--Hb_000679_080 Hb_002374_450 Hb_002374_450 Hb_000516_080--Hb_002374_450 Hb_000516_080--Hb_002811_250 Hb_005181_120--Hb_010098_040 Hb_005181_120--Hb_000679_080 Hb_005181_120--Hb_002811_250 Hb_005181_120--Hb_007982_040 Hb_005181_120--Hb_000108_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0268645 0.04672 0.430174 0.193549 0.0511957 0.0268355
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.030595 0 0.0905071 0.0288165 0.453539

CAGE analysis