Hb_119044_010

Information

Type -
Description -
Location Contig119044: 15828-32070
Sequence    

Annotation

kegg
ID rcu:RCOM_1632320
description hypothetical protein
nr
ID XP_012085914.1
description PREDICTED: stomatal closure-related actin-binding protein 2-like [Jatropha curcas]
swissprot
ID F4IIZ9
description Stomatal closure-related actin-binding protein 2 OS=Arabidopsis thaliana GN=SCAB2 PE=2 SV=1
trembl
ID A0A067JU64
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22108 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05621: 16295-32030
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_119044_010 0.0 - - PREDICTED: stomatal closure-related actin-binding protein 2-like [Jatropha curcas]
2 Hb_002028_180 0.0943182351 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
3 Hb_001227_070 0.1425669497 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9 [Jatropha curcas]
4 Hb_002817_040 0.1441430847 - - PREDICTED: kinesin-II 85 kDa subunit isoform X1 [Jatropha curcas]
5 Hb_001544_050 0.1448883329 - - PREDICTED: U-box domain-containing protein 11-like [Jatropha curcas]
6 Hb_001017_130 0.1516646202 - - hypothetical protein POPTR_0010s06070g [Populus trichocarpa]
7 Hb_000984_150 0.1523124248 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002662_110 0.1529493735 - - Kinesin heavy chain, putative [Ricinus communis]
9 Hb_001180_010 0.1556520089 - - PREDICTED: glucan endo-1,3-beta-glucosidase 9 [Jatropha curcas]
10 Hb_000612_090 0.1563475005 - - PREDICTED: mitochondrial carnitine/acylcarnitine carrier-like protein [Jatropha curcas]
11 Hb_000977_170 0.157501892 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_000390_210 0.1595192274 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
13 Hb_032631_030 0.1600097185 - - phosphatidic acid phosphatase, putative [Ricinus communis]
14 Hb_004994_330 0.1604660977 - - DNA binding protein, putative [Ricinus communis]
15 Hb_000108_150 0.1604752244 - - alpha/beta hydrolase, putative [Ricinus communis]
16 Hb_071079_020 0.1628156295 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
17 Hb_000099_170 0.1673348946 - - PREDICTED: uncharacterized protein LOC105645733 [Jatropha curcas]
18 Hb_001195_660 0.1690438361 - - metalloendopeptidase, putative [Ricinus communis]
19 Hb_172426_060 0.1723450047 - - PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Jatropha curcas]
20 Hb_004041_050 0.1748222231 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_119044_010 Hb_119044_010 Hb_002028_180 Hb_002028_180 Hb_119044_010--Hb_002028_180 Hb_001227_070 Hb_001227_070 Hb_119044_010--Hb_001227_070 Hb_002817_040 Hb_002817_040 Hb_119044_010--Hb_002817_040 Hb_001544_050 Hb_001544_050 Hb_119044_010--Hb_001544_050 Hb_001017_130 Hb_001017_130 Hb_119044_010--Hb_001017_130 Hb_000984_150 Hb_000984_150 Hb_119044_010--Hb_000984_150 Hb_002028_180--Hb_002817_040 Hb_000612_090 Hb_000612_090 Hb_002028_180--Hb_000612_090 Hb_000805_010 Hb_000805_010 Hb_002028_180--Hb_000805_010 Hb_003935_070 Hb_003935_070 Hb_002028_180--Hb_003935_070 Hb_000616_030 Hb_000616_030 Hb_002028_180--Hb_000616_030 Hb_000879_170 Hb_000879_170 Hb_001227_070--Hb_000879_170 Hb_000748_120 Hb_000748_120 Hb_001227_070--Hb_000748_120 Hb_001227_070--Hb_001544_050 Hb_001180_010 Hb_001180_010 Hb_001227_070--Hb_001180_010 Hb_147378_010 Hb_147378_010 Hb_001227_070--Hb_147378_010 Hb_001369_100 Hb_001369_100 Hb_002817_040--Hb_001369_100 Hb_009079_050 Hb_009079_050 Hb_002817_040--Hb_009079_050 Hb_000749_020 Hb_000749_020 Hb_002817_040--Hb_000749_020 Hb_000108_150 Hb_000108_150 Hb_002817_040--Hb_000108_150 Hb_002817_040--Hb_000612_090 Hb_001544_050--Hb_001180_010 Hb_000390_210 Hb_000390_210 Hb_001544_050--Hb_000390_210 Hb_000465_410 Hb_000465_410 Hb_001544_050--Hb_000465_410 Hb_002701_070 Hb_002701_070 Hb_001544_050--Hb_002701_070 Hb_000749_260 Hb_000749_260 Hb_001544_050--Hb_000749_260 Hb_004994_330 Hb_004994_330 Hb_001544_050--Hb_004994_330 Hb_001017_130--Hb_001180_010 Hb_001017_130--Hb_001544_050 Hb_000388_080 Hb_000388_080 Hb_001017_130--Hb_000388_080 Hb_001017_130--Hb_002701_070 Hb_001433_150 Hb_001433_150 Hb_001017_130--Hb_001433_150 Hb_001017_130--Hb_004994_330 Hb_000322_030 Hb_000322_030 Hb_000984_150--Hb_000322_030 Hb_001369_010 Hb_001369_010 Hb_000984_150--Hb_001369_010 Hb_000417_050 Hb_000417_050 Hb_000984_150--Hb_000417_050 Hb_001677_040 Hb_001677_040 Hb_000984_150--Hb_001677_040 Hb_000984_150--Hb_001544_050 Hb_008179_030 Hb_008179_030 Hb_000984_150--Hb_008179_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.26899 2.10651 21.5916 21.7795 3.42079 0.614263
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.592337 0.445783 3.90593 2.12274 26.323

CAGE analysis