Hb_000748_120

Information

Type transcription factor
Description TF Family: MIKC
Location Contig748: 156048-162137
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa010578mg
description hypothetical protein
nr
ID XP_012066543.1
description PREDICTED: agamous-like MADS-box protein AGL1 [Jatropha curcas]
swissprot
ID P29385
description Agamous-like MADS-box protein AGL5 OS=Arabidopsis thaliana GN=AGL5 PE=1 SV=1
trembl
ID G8FUQ3
description AGAMOUS-like protein OS=Mangifera indica GN=AG2 PE=2 SV=1
Gene Ontology
ID GO:0005634
description shatterproof-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56751: 161187-161516
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000748_120 0.0 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL1 [Jatropha curcas]
2 Hb_051663_010 0.0994613369 - - receptor-kinase, putative [Ricinus communis]
3 Hb_041692_010 0.1009744035 - - annexin [Manihot esculenta]
4 Hb_000847_130 0.1244680144 - - PREDICTED: fimbrin-2 [Jatropha curcas]
5 Hb_005976_110 0.1257588227 - - PREDICTED: uncharacterized protein LOC105639708 [Jatropha curcas]
6 Hb_007617_010 0.1260883803 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH63 isoform X1 [Jatropha curcas]
7 Hb_001817_040 0.1306746519 - - myosin XI, putative [Ricinus communis]
8 Hb_003702_060 0.1337195778 - - PREDICTED: protein trichome birefringence-like 38 [Jatropha curcas]
9 Hb_000017_200 0.1366120129 - - PREDICTED: uncharacterized protein LOC105645766 [Jatropha curcas]
10 Hb_001516_010 0.1371808387 - - PREDICTED: guanylate kinase 2 [Jatropha curcas]
11 Hb_001186_100 0.137656106 - - PREDICTED: uncharacterized protein LOC105640806 isoform X1 [Jatropha curcas]
12 Hb_001541_130 0.1380718684 - - GDSL esterase/lipase [Morus notabilis]
13 Hb_000951_150 0.1418968769 - - hypothetical protein POPTR_0015s05850g [Populus trichocarpa]
14 Hb_000922_200 0.1433102734 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0012s08280g [Populus trichocarpa]
15 Hb_001514_030 0.1440296311 - - PREDICTED: cyclin-D3-3-like [Jatropha curcas]
16 Hb_168918_010 0.1451137513 - - pectin acetylesterase, putative [Ricinus communis]
17 Hb_001227_070 0.1458392957 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9 [Jatropha curcas]
18 Hb_000497_250 0.1458420536 - - PREDICTED: potassium transporter 5 [Jatropha curcas]
19 Hb_111985_100 0.148464445 - - beta-galactosidase, putative [Ricinus communis]
20 Hb_001095_020 0.1486506446 - - PREDICTED: F-box protein At2g26850-like [Jatropha curcas]

Gene co-expression network

sample Hb_000748_120 Hb_000748_120 Hb_051663_010 Hb_051663_010 Hb_000748_120--Hb_051663_010 Hb_041692_010 Hb_041692_010 Hb_000748_120--Hb_041692_010 Hb_000847_130 Hb_000847_130 Hb_000748_120--Hb_000847_130 Hb_005976_110 Hb_005976_110 Hb_000748_120--Hb_005976_110 Hb_007617_010 Hb_007617_010 Hb_000748_120--Hb_007617_010 Hb_001817_040 Hb_001817_040 Hb_000748_120--Hb_001817_040 Hb_001516_010 Hb_001516_010 Hb_051663_010--Hb_001516_010 Hb_000000_390 Hb_000000_390 Hb_051663_010--Hb_000000_390 Hb_111985_100 Hb_111985_100 Hb_051663_010--Hb_111985_100 Hb_000922_200 Hb_000922_200 Hb_051663_010--Hb_000922_200 Hb_032920_020 Hb_032920_020 Hb_051663_010--Hb_032920_020 Hb_009486_050 Hb_009486_050 Hb_051663_010--Hb_009486_050 Hb_041692_010--Hb_051663_010 Hb_041692_010--Hb_001516_010 Hb_000347_100 Hb_000347_100 Hb_041692_010--Hb_000347_100 Hb_001541_130 Hb_001541_130 Hb_041692_010--Hb_001541_130 Hb_008725_090 Hb_008725_090 Hb_041692_010--Hb_008725_090 Hb_001504_210 Hb_001504_210 Hb_000847_130--Hb_001504_210 Hb_001279_240 Hb_001279_240 Hb_000847_130--Hb_001279_240 Hb_000847_130--Hb_001817_040 Hb_000847_130--Hb_051663_010 Hb_000017_200 Hb_000017_200 Hb_000847_130--Hb_000017_200 Hb_001544_090 Hb_001544_090 Hb_005976_110--Hb_001544_090 Hb_004435_020 Hb_004435_020 Hb_005976_110--Hb_004435_020 Hb_001095_020 Hb_001095_020 Hb_005976_110--Hb_001095_020 Hb_000878_050 Hb_000878_050 Hb_005976_110--Hb_000878_050 Hb_000680_170 Hb_000680_170 Hb_005976_110--Hb_000680_170 Hb_000032_420 Hb_000032_420 Hb_005976_110--Hb_000032_420 Hb_001080_190 Hb_001080_190 Hb_007617_010--Hb_001080_190 Hb_007617_010--Hb_001544_090 Hb_001439_080 Hb_001439_080 Hb_007617_010--Hb_001439_080 Hb_001817_210 Hb_001817_210 Hb_007617_010--Hb_001817_210 Hb_007617_010--Hb_051663_010 Hb_007617_010--Hb_005976_110 Hb_001817_040--Hb_001504_210 Hb_001140_190 Hb_001140_190 Hb_001817_040--Hb_001140_190 Hb_000071_060 Hb_000071_060 Hb_001817_040--Hb_000071_060 Hb_004007_140 Hb_004007_140 Hb_001817_040--Hb_004007_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.113197 0.0606571 2.16389 2.11325 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0543245 0.0981059 0.220021 1.74168

CAGE analysis