Hb_004007_140

Information

Type -
Description -
Location Contig4007: 124946-126454
Sequence    

Annotation

kegg
ID pop:POPTR_0007s09820g
description cyclin family protein
nr
ID XP_012079399.1
description PREDICTED: cyclin-D5-1-like isoform X1 [Jatropha curcas]
swissprot
ID Q2V3B2
description Cyclin-D5-1 OS=Arabidopsis thaliana GN=CYCD5-1 PE=2 SV=2
trembl
ID U5G4S0
description Cyclin family protein OS=Populus trichocarpa GN=POPTR_0007s09820g PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39865: 125127-125423
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004007_140 0.0 - - PREDICTED: cyclin-D5-1-like isoform X1 [Jatropha curcas]
2 Hb_001504_210 0.1386717761 - - PREDICTED: probable receptor-like protein kinase At1g80640 isoform X1 [Jatropha curcas]
3 Hb_001817_040 0.1394263289 - - myosin XI, putative [Ricinus communis]
4 Hb_000438_160 0.1428271098 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001140_190 0.1442486214 - - PREDICTED: A-kinase anchor protein 9 [Jatropha curcas]
6 Hb_000847_130 0.1549989778 - - PREDICTED: fimbrin-2 [Jatropha curcas]
7 Hb_001491_020 0.1604952803 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
8 Hb_000071_060 0.1647196077 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000107_580 0.1701520611 - - PREDICTED: delta(24)-sterol reductase [Jatropha curcas]
10 Hb_001511_210 0.1722985872 - - PREDICTED: protein ESKIMO 1-like [Jatropha curcas]
11 Hb_000331_170 0.1779804816 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 [Jatropha curcas]
12 Hb_000856_270 0.1786272083 - - PREDICTED: protein NRT1/ PTR FAMILY 4.6 [Jatropha curcas]
13 Hb_000243_230 0.1791664352 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_003121_010 0.1816499325 - - hypothetical protein POPTR_0018s09720g [Populus trichocarpa]
15 Hb_005276_140 0.1822531236 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000017_200 0.1822987384 - - PREDICTED: uncharacterized protein LOC105645766 [Jatropha curcas]
17 Hb_002301_120 0.1828680561 - - PREDICTED: uncharacterized protein LOC105649581 [Jatropha curcas]
18 Hb_008686_040 0.1841660567 - - PREDICTED: uncharacterized protein LOC105632278 isoform X3 [Jatropha curcas]
19 Hb_000031_240 0.1864308618 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
20 Hb_001279_240 0.1888454043 transcription factor TF Family: Orphans PREDICTED: uncharacterized protein LOC105633500 [Jatropha curcas]

Gene co-expression network

sample Hb_004007_140 Hb_004007_140 Hb_001504_210 Hb_001504_210 Hb_004007_140--Hb_001504_210 Hb_001817_040 Hb_001817_040 Hb_004007_140--Hb_001817_040 Hb_000438_160 Hb_000438_160 Hb_004007_140--Hb_000438_160 Hb_001140_190 Hb_001140_190 Hb_004007_140--Hb_001140_190 Hb_000847_130 Hb_000847_130 Hb_004007_140--Hb_000847_130 Hb_001491_020 Hb_001491_020 Hb_004007_140--Hb_001491_020 Hb_001504_210--Hb_001817_040 Hb_001504_210--Hb_000847_130 Hb_001504_210--Hb_001140_190 Hb_001504_210--Hb_001491_020 Hb_000071_060 Hb_000071_060 Hb_001504_210--Hb_000071_060 Hb_001817_040--Hb_000847_130 Hb_001817_040--Hb_001140_190 Hb_000748_120 Hb_000748_120 Hb_001817_040--Hb_000748_120 Hb_001817_040--Hb_000071_060 Hb_000438_160--Hb_001140_190 Hb_000017_200 Hb_000017_200 Hb_000438_160--Hb_000017_200 Hb_000331_170 Hb_000331_170 Hb_000438_160--Hb_000331_170 Hb_000438_160--Hb_000071_060 Hb_000932_110 Hb_000932_110 Hb_000438_160--Hb_000932_110 Hb_000438_160--Hb_001491_020 Hb_001511_210 Hb_001511_210 Hb_001140_190--Hb_001511_210 Hb_005276_140 Hb_005276_140 Hb_001140_190--Hb_005276_140 Hb_001140_190--Hb_000071_060 Hb_001140_190--Hb_000331_170 Hb_001279_240 Hb_001279_240 Hb_000847_130--Hb_001279_240 Hb_051663_010 Hb_051663_010 Hb_000847_130--Hb_051663_010 Hb_000847_130--Hb_000748_120 Hb_000847_130--Hb_000017_200 Hb_001544_050 Hb_001544_050 Hb_001491_020--Hb_001544_050 Hb_000465_410 Hb_000465_410 Hb_001491_020--Hb_000465_410 Hb_001491_020--Hb_000847_130 Hb_001491_020--Hb_001817_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0392275 2.43808 1.27544 0.0563851 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0352504 0.261131 0.0424317 1.01637

CAGE analysis