Hb_001279_240

Information

Type transcription factor
Description TF Family: Orphans
Location Contig1279: 221371-223020
Sequence    

Annotation

kegg
ID rcu:RCOM_0531220
description hypothetical protein
nr
ID XP_012071491.1
description PREDICTED: uncharacterized protein LOC105633500 [Jatropha curcas]
swissprot
ID Q9LU68
description Protein CHLOROPLAST IMPORT APPARATUS 2 OS=Arabidopsis thaliana GN=CIA2 PE=2 SV=1
trembl
ID A0A067LD08
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10206 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08601: 221225-223344
cDNA
(Sanger)
(ID:Location)		 019_E07.ab1: 222304-223036 , 023_I16.ab1: 222305-223036

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001279_240 0.0 transcription factor TF Family: Orphans PREDICTED: uncharacterized protein LOC105633500 [Jatropha curcas]
2 Hb_000847_130 0.1133725809 - - PREDICTED: fimbrin-2 [Jatropha curcas]
3 Hb_001348_040 0.1291731506 - - hypothetical protein VITISV_006651 [Vitis vinifera]
4 Hb_004122_010 0.1403229486 - - PREDICTED: uncharacterized protein LOC105630923 [Jatropha curcas]
5 Hb_003097_130 0.1469448036 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000109_140 0.1510480856 - - hypothetical protein CICLE_v100314482mg, partial [Citrus clementina]
7 Hb_041692_010 0.1550393582 - - annexin [Manihot esculenta]
8 Hb_005731_010 0.1571955736 - - hypothetical protein VITISV_030941 [Vitis vinifera]
9 Hb_005675_050 0.1589367796 - - alpha-glucosidase, putative [Ricinus communis]
10 Hb_000189_180 0.1594591519 - - PREDICTED: calmodulin-like protein 11 [Jatropha curcas]
11 Hb_001516_010 0.1603851976 - - PREDICTED: guanylate kinase 2 [Jatropha curcas]
12 Hb_004076_060 0.1624453658 - - PREDICTED: UDP-glycosyltransferase 82A1 [Jatropha curcas]
13 Hb_002391_030 0.1629303772 - - hypothetical protein CISIN_1g020187mg [Citrus sinensis]
14 Hb_003702_060 0.1632726079 - - PREDICTED: protein trichome birefringence-like 38 [Jatropha curcas]
15 Hb_012655_010 0.1634192411 - - hypothetical protein JCGZ_09061 [Jatropha curcas]
16 Hb_000748_120 0.1634474687 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL1 [Jatropha curcas]
17 Hb_002374_470 0.1640185167 - - PREDICTED: filament-like plant protein isoform X2 [Jatropha curcas]
18 Hb_002248_010 0.1648127484 - - PREDICTED: uncharacterized protein LOC105124180 [Populus euphratica]
19 Hb_001079_060 0.1667386849 - - PREDICTED: probable vacuolar amino acid transporter YPQ1 isoform X1 [Jatropha curcas]
20 Hb_008705_030 0.1667543904 - - hypothetical protein JCGZ_13017 [Jatropha curcas]

Gene co-expression network

sample Hb_001279_240 Hb_001279_240 Hb_000847_130 Hb_000847_130 Hb_001279_240--Hb_000847_130 Hb_001348_040 Hb_001348_040 Hb_001279_240--Hb_001348_040 Hb_004122_010 Hb_004122_010 Hb_001279_240--Hb_004122_010 Hb_003097_130 Hb_003097_130 Hb_001279_240--Hb_003097_130 Hb_000109_140 Hb_000109_140 Hb_001279_240--Hb_000109_140 Hb_041692_010 Hb_041692_010 Hb_001279_240--Hb_041692_010 Hb_001504_210 Hb_001504_210 Hb_000847_130--Hb_001504_210 Hb_001817_040 Hb_001817_040 Hb_000847_130--Hb_001817_040 Hb_051663_010 Hb_051663_010 Hb_000847_130--Hb_051663_010 Hb_000748_120 Hb_000748_120 Hb_000847_130--Hb_000748_120 Hb_000017_200 Hb_000017_200 Hb_000847_130--Hb_000017_200 Hb_001348_040--Hb_004122_010 Hb_062807_010 Hb_062807_010 Hb_001348_040--Hb_062807_010 Hb_002757_010 Hb_002757_010 Hb_001348_040--Hb_002757_010 Hb_005305_160 Hb_005305_160 Hb_001348_040--Hb_005305_160 Hb_000077_300 Hb_000077_300 Hb_001348_040--Hb_000077_300 Hb_001348_040--Hb_000109_140 Hb_005675_050 Hb_005675_050 Hb_004122_010--Hb_005675_050 Hb_000297_210 Hb_000297_210 Hb_004122_010--Hb_000297_210 Hb_001514_030 Hb_001514_030 Hb_004122_010--Hb_001514_030 Hb_007632_160 Hb_007632_160 Hb_004122_010--Hb_007632_160 Hb_168918_010 Hb_168918_010 Hb_004122_010--Hb_168918_010 Hb_005181_170 Hb_005181_170 Hb_004122_010--Hb_005181_170 Hb_021065_010 Hb_021065_010 Hb_003097_130--Hb_021065_010 Hb_003097_130--Hb_005675_050 Hb_003097_130--Hb_004122_010 Hb_001287_090 Hb_001287_090 Hb_003097_130--Hb_001287_090 Hb_009767_060 Hb_009767_060 Hb_003097_130--Hb_009767_060 Hb_003097_130--Hb_005181_170 Hb_000189_180 Hb_000189_180 Hb_000109_140--Hb_000189_180 Hb_005731_010 Hb_005731_010 Hb_000109_140--Hb_005731_010 Hb_001958_010 Hb_001958_010 Hb_000109_140--Hb_001958_010 Hb_004076_060 Hb_004076_060 Hb_000109_140--Hb_004076_060 Hb_012655_010 Hb_012655_010 Hb_000109_140--Hb_012655_010 Hb_003894_170 Hb_003894_170 Hb_000109_140--Hb_003894_170 Hb_041692_010--Hb_000748_120 Hb_041692_010--Hb_051663_010 Hb_001516_010 Hb_001516_010 Hb_041692_010--Hb_001516_010 Hb_000347_100 Hb_000347_100 Hb_041692_010--Hb_000347_100 Hb_001541_130 Hb_001541_130 Hb_041692_010--Hb_001541_130 Hb_008725_090 Hb_008725_090 Hb_041692_010--Hb_008725_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.075892 8.69781 6.02173 0 0.0963464
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.792953 1.47358 5.36023

CAGE analysis