Hb_000347_100

Information

Type transcription factor
Description TF Family: C3H
Location Contig347: 107691-110961
Sequence    

Annotation

kegg
ID rcu:RCOM_0684740
description hypothetical protein
nr
ID XP_002529187.1
description hypothetical protein RCOM_0684740 [Ricinus communis]
swissprot
ID Q338N2
description Zinc finger CCCH domain-containing protein 62 OS=Oryza sativa subsp. japonica GN=Os10g0391300 PE=3 SV=2
trembl
ID B9ST68
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0684740 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger ccch domain-containing protein 62-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36182: 108472-109198
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000347_100 0.0 transcription factor TF Family: C3H hypothetical protein RCOM_0684740 [Ricinus communis]
2 Hb_009767_060 0.1156057045 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Jatropha curcas]
3 Hb_003580_050 0.1197656504 - - PREDICTED: TBC1 domain family member 2B [Jatropha curcas]
4 Hb_116647_010 0.121716731 - - conserved hypothetical protein [Ricinus communis]
5 Hb_041692_010 0.1217429627 - - annexin [Manihot esculenta]
6 Hb_000416_090 0.12269497 - - Aquaporin NIP1.1, putative [Ricinus communis]
7 Hb_029639_030 0.126348743 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 2-like [Jatropha curcas]
8 Hb_004881_070 0.1270206229 - - ATP binding protein, putative [Ricinus communis]
9 Hb_000303_060 0.1274704122 - - o-methyltransferase, putative [Ricinus communis]
10 Hb_000181_220 0.1301504981 - - PREDICTED: MATE efflux family protein LAL5-like isoform X2 [Jatropha curcas]
11 Hb_000996_030 0.1343145792 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g63430 isoform X1 [Jatropha curcas]
12 Hb_004696_010 0.137150801 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At4g34500 [Jatropha curcas]
13 Hb_000270_100 0.1382587932 - - ATPase 4, plasma membrane-type -like protein [Gossypium arboreum]
14 Hb_001488_350 0.1392114584 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001517_070 0.139511257 - - protein with unknown function [Ricinus communis]
16 Hb_006816_250 0.141554072 - - PREDICTED: uncharacterized protein LOC105647444 [Jatropha curcas]
17 Hb_003938_230 0.1437766677 - - Potassium transporter, putative [Ricinus communis]
18 Hb_002724_010 0.1438584367 - - PREDICTED: nucleobase-ascorbate transporter 4-like [Citrus sinensis]
19 Hb_162174_010 0.1452005141 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
20 Hb_004116_050 0.1456989096 - - PREDICTED: cytochrome P450 90A1 [Jatropha curcas]

Gene co-expression network

sample Hb_000347_100 Hb_000347_100 Hb_009767_060 Hb_009767_060 Hb_000347_100--Hb_009767_060 Hb_003580_050 Hb_003580_050 Hb_000347_100--Hb_003580_050 Hb_116647_010 Hb_116647_010 Hb_000347_100--Hb_116647_010 Hb_041692_010 Hb_041692_010 Hb_000347_100--Hb_041692_010 Hb_000416_090 Hb_000416_090 Hb_000347_100--Hb_000416_090 Hb_029639_030 Hb_029639_030 Hb_000347_100--Hb_029639_030 Hb_032572_010 Hb_032572_010 Hb_009767_060--Hb_032572_010 Hb_000303_060 Hb_000303_060 Hb_009767_060--Hb_000303_060 Hb_002045_010 Hb_002045_010 Hb_009767_060--Hb_002045_010 Hb_004122_010 Hb_004122_010 Hb_009767_060--Hb_004122_010 Hb_001396_030 Hb_001396_030 Hb_009767_060--Hb_001396_030 Hb_001287_090 Hb_001287_090 Hb_009767_060--Hb_001287_090 Hb_028008_040 Hb_028008_040 Hb_003580_050--Hb_028008_040 Hb_000977_030 Hb_000977_030 Hb_003580_050--Hb_000977_030 Hb_000996_030 Hb_000996_030 Hb_003580_050--Hb_000996_030 Hb_004696_010 Hb_004696_010 Hb_003580_050--Hb_004696_010 Hb_002724_010 Hb_002724_010 Hb_003580_050--Hb_002724_010 Hb_004218_200 Hb_004218_200 Hb_003580_050--Hb_004218_200 Hb_005568_020 Hb_005568_020 Hb_116647_010--Hb_005568_020 Hb_002027_430 Hb_002027_430 Hb_116647_010--Hb_002027_430 Hb_001863_010 Hb_001863_010 Hb_116647_010--Hb_001863_010 Hb_000735_020 Hb_000735_020 Hb_116647_010--Hb_000735_020 Hb_064546_010 Hb_064546_010 Hb_116647_010--Hb_064546_010 Hb_001085_190 Hb_001085_190 Hb_116647_010--Hb_001085_190 Hb_000748_120 Hb_000748_120 Hb_041692_010--Hb_000748_120 Hb_051663_010 Hb_051663_010 Hb_041692_010--Hb_051663_010 Hb_001516_010 Hb_001516_010 Hb_041692_010--Hb_001516_010 Hb_001541_130 Hb_001541_130 Hb_041692_010--Hb_001541_130 Hb_008725_090 Hb_008725_090 Hb_041692_010--Hb_008725_090 Hb_004116_050 Hb_004116_050 Hb_000416_090--Hb_004116_050 Hb_001405_040 Hb_001405_040 Hb_000416_090--Hb_001405_040 Hb_000416_090--Hb_029639_030 Hb_000181_220 Hb_000181_220 Hb_000416_090--Hb_000181_220 Hb_019570_010 Hb_019570_010 Hb_000416_090--Hb_019570_010 Hb_000318_010 Hb_000318_010 Hb_000416_090--Hb_000318_010 Hb_029639_030--Hb_000181_220 Hb_000152_880 Hb_000152_880 Hb_029639_030--Hb_000152_880 Hb_033772_060 Hb_033772_060 Hb_029639_030--Hb_033772_060 Hb_007894_080 Hb_007894_080 Hb_029639_030--Hb_007894_080 Hb_005892_040 Hb_005892_040 Hb_029639_030--Hb_005892_040 Hb_029639_030--Hb_000977_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0148531 0.0929906 1.06863 1.22782 0 0.0235143
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0544362 0.0214145 0 0.392598 0.990231

CAGE analysis