Hb_001348_040

Information

Type -
Description -
Location Contig1348: 29752-31057
Sequence    

Annotation

kegg
ID vvi:100248801
description uncharacterized LOC100248801
nr
ID CAN67424.1
description hypothetical protein VITISV_006651 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5B200
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006651 PE=4 SV=1
Gene Ontology
ID GO:0016787
description adenine nucleotide alpha hydrolases-like superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09788: 29654-31281
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001348_040 0.0 - - hypothetical protein VITISV_006651 [Vitis vinifera]
2 Hb_004122_010 0.1097150685 - - PREDICTED: uncharacterized protein LOC105630923 [Jatropha curcas]
3 Hb_062807_010 0.1113165861 - - hypothetical protein JCGZ_15896 [Jatropha curcas]
4 Hb_002757_010 0.1156076434 - - hypothetical protein POPTR_0013s10580g [Populus trichocarpa]
5 Hb_005305_160 0.1191125856 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000077_300 0.1212660301 - - PREDICTED: expansin-B3-like [Jatropha curcas]
7 Hb_000109_140 0.1226476308 - - hypothetical protein CICLE_v100314482mg, partial [Citrus clementina]
8 Hb_000739_170 0.1236063681 - - PREDICTED: 65-kDa microtubule-associated protein 4 [Jatropha curcas]
9 Hb_005675_050 0.1238372895 - - alpha-glucosidase, putative [Ricinus communis]
10 Hb_008705_030 0.1272206889 - - hypothetical protein JCGZ_13017 [Jatropha curcas]
11 Hb_001279_240 0.1291731506 transcription factor TF Family: Orphans PREDICTED: uncharacterized protein LOC105633500 [Jatropha curcas]
12 Hb_000297_210 0.1298550617 - - Bipolar kinesin KRP-130, putative [Ricinus communis]
13 Hb_001439_050 0.1300101051 - - plastocyanin-like domain-containing family protein [Populus trichocarpa]
14 Hb_007520_050 0.1301464551 transcription factor TF Family: MYB PREDICTED: transcription factor WER-like [Jatropha curcas]
15 Hb_008304_010 0.133538435 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Fragaria vesca subsp. vesca]
16 Hb_000359_180 0.1341285524 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003894_170 0.1387972312 transcription factor TF Family: LOB hypothetical protein CICLE_v10021992mg [Citrus clementina]
18 Hb_174168_010 0.1403098435 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
19 Hb_001053_170 0.1404917288 - - PREDICTED: uncharacterized protein LOC105628694 [Jatropha curcas]
20 Hb_002374_470 0.1441939188 - - PREDICTED: filament-like plant protein isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001348_040 Hb_001348_040 Hb_004122_010 Hb_004122_010 Hb_001348_040--Hb_004122_010 Hb_062807_010 Hb_062807_010 Hb_001348_040--Hb_062807_010 Hb_002757_010 Hb_002757_010 Hb_001348_040--Hb_002757_010 Hb_005305_160 Hb_005305_160 Hb_001348_040--Hb_005305_160 Hb_000077_300 Hb_000077_300 Hb_001348_040--Hb_000077_300 Hb_000109_140 Hb_000109_140 Hb_001348_040--Hb_000109_140 Hb_005675_050 Hb_005675_050 Hb_004122_010--Hb_005675_050 Hb_000297_210 Hb_000297_210 Hb_004122_010--Hb_000297_210 Hb_001514_030 Hb_001514_030 Hb_004122_010--Hb_001514_030 Hb_007632_160 Hb_007632_160 Hb_004122_010--Hb_007632_160 Hb_168918_010 Hb_168918_010 Hb_004122_010--Hb_168918_010 Hb_005181_170 Hb_005181_170 Hb_004122_010--Hb_005181_170 Hb_001439_050 Hb_001439_050 Hb_062807_010--Hb_001439_050 Hb_003101_020 Hb_003101_020 Hb_062807_010--Hb_003101_020 Hb_108576_020 Hb_108576_020 Hb_062807_010--Hb_108576_020 Hb_004602_010 Hb_004602_010 Hb_062807_010--Hb_004602_010 Hb_008304_010 Hb_008304_010 Hb_062807_010--Hb_008304_010 Hb_007313_030 Hb_007313_030 Hb_062807_010--Hb_007313_030 Hb_002757_010--Hb_000077_300 Hb_002700_030 Hb_002700_030 Hb_002757_010--Hb_002700_030 Hb_003902_070 Hb_003902_070 Hb_002757_010--Hb_003902_070 Hb_000205_180 Hb_000205_180 Hb_002757_010--Hb_000205_180 Hb_002757_010--Hb_062807_010 Hb_005116_120 Hb_005116_120 Hb_002757_010--Hb_005116_120 Hb_005305_160--Hb_002757_010 Hb_005305_160--Hb_000077_300 Hb_005305_160--Hb_005116_120 Hb_011671_050 Hb_011671_050 Hb_005305_160--Hb_011671_050 Hb_005305_160--Hb_000297_210 Hb_005305_160--Hb_001439_050 Hb_000077_300--Hb_002700_030 Hb_000077_300--Hb_003902_070 Hb_001310_060 Hb_001310_060 Hb_000077_300--Hb_001310_060 Hb_080147_070 Hb_080147_070 Hb_000077_300--Hb_080147_070 Hb_000077_300--Hb_000205_180 Hb_000189_180 Hb_000189_180 Hb_000109_140--Hb_000189_180 Hb_005731_010 Hb_005731_010 Hb_000109_140--Hb_005731_010 Hb_001958_010 Hb_001958_010 Hb_000109_140--Hb_001958_010 Hb_004076_060 Hb_004076_060 Hb_000109_140--Hb_004076_060 Hb_012655_010 Hb_012655_010 Hb_000109_140--Hb_012655_010 Hb_003894_170 Hb_003894_170 Hb_000109_140--Hb_003894_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.08051 5.54801 3.10325 0.0370774 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.12691 1.11596 2.10808

CAGE analysis