Hb_000847_130

Information

Type -
Description -
Location Contig847: 189512-195978
Sequence    

Annotation

kegg
ID rcu:RCOM_1626860
description fimbrin, putative
nr
ID XP_012084895.1
description PREDICTED: fimbrin-2 [Jatropha curcas]
swissprot
ID O50064
description Fimbrin-2 OS=Arabidopsis thaliana GN=FIM2 PE=2 SV=1
trembl
ID A0A067LA47
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15112 PE=4 SV=1
Gene Ontology
ID GO:0005515
description fimbrin-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60261: 189569-194739 , PASA_asmbl_60262: 189573-194739
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000847_130 0.0 - - PREDICTED: fimbrin-2 [Jatropha curcas]
2 Hb_001504_210 0.0982194897 - - PREDICTED: probable receptor-like protein kinase At1g80640 isoform X1 [Jatropha curcas]
3 Hb_001279_240 0.1133725809 transcription factor TF Family: Orphans PREDICTED: uncharacterized protein LOC105633500 [Jatropha curcas]
4 Hb_001817_040 0.1205085865 - - myosin XI, putative [Ricinus communis]
5 Hb_051663_010 0.12389986 - - receptor-kinase, putative [Ricinus communis]
6 Hb_000748_120 0.1244680144 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL1 [Jatropha curcas]
7 Hb_000017_200 0.125288484 - - PREDICTED: uncharacterized protein LOC105645766 [Jatropha curcas]
8 Hb_001516_010 0.1362550572 - - PREDICTED: guanylate kinase 2 [Jatropha curcas]
9 Hb_001079_060 0.1388050481 - - PREDICTED: probable vacuolar amino acid transporter YPQ1 isoform X1 [Jatropha curcas]
10 Hb_002609_120 0.1393245676 - - hypothetical protein POPTR_0001s25660g [Populus trichocarpa]
11 Hb_004122_010 0.1405251754 - - PREDICTED: uncharacterized protein LOC105630923 [Jatropha curcas]
12 Hb_000000_390 0.1406758314 - - PREDICTED: uncharacterized protein LOC105633753 [Jatropha curcas]
13 Hb_005675_050 0.1406945623 - - alpha-glucosidase, putative [Ricinus communis]
14 Hb_003097_130 0.1409571721 - - conserved hypothetical protein [Ricinus communis]
15 Hb_041692_010 0.1427656617 - - annexin [Manihot esculenta]
16 Hb_000009_270 0.1443251859 - - Calmodulin, putative [Ricinus communis]
17 Hb_000156_110 0.1453705617 - - Uncharacterized protein TCM_029490 [Theobroma cacao]
18 Hb_032920_020 0.1456359615 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
19 Hb_005976_110 0.1461373397 - - PREDICTED: uncharacterized protein LOC105639708 [Jatropha curcas]
20 Hb_009486_050 0.1461808681 - - PREDICTED: cyclin-U4-1 [Jatropha curcas]

Gene co-expression network

sample Hb_000847_130 Hb_000847_130 Hb_001504_210 Hb_001504_210 Hb_000847_130--Hb_001504_210 Hb_001279_240 Hb_001279_240 Hb_000847_130--Hb_001279_240 Hb_001817_040 Hb_001817_040 Hb_000847_130--Hb_001817_040 Hb_051663_010 Hb_051663_010 Hb_000847_130--Hb_051663_010 Hb_000748_120 Hb_000748_120 Hb_000847_130--Hb_000748_120 Hb_000017_200 Hb_000017_200 Hb_000847_130--Hb_000017_200 Hb_001504_210--Hb_001817_040 Hb_004007_140 Hb_004007_140 Hb_001504_210--Hb_004007_140 Hb_001140_190 Hb_001140_190 Hb_001504_210--Hb_001140_190 Hb_001491_020 Hb_001491_020 Hb_001504_210--Hb_001491_020 Hb_000071_060 Hb_000071_060 Hb_001504_210--Hb_000071_060 Hb_001348_040 Hb_001348_040 Hb_001279_240--Hb_001348_040 Hb_004122_010 Hb_004122_010 Hb_001279_240--Hb_004122_010 Hb_003097_130 Hb_003097_130 Hb_001279_240--Hb_003097_130 Hb_000109_140 Hb_000109_140 Hb_001279_240--Hb_000109_140 Hb_041692_010 Hb_041692_010 Hb_001279_240--Hb_041692_010 Hb_001817_040--Hb_001140_190 Hb_001817_040--Hb_000748_120 Hb_001817_040--Hb_000071_060 Hb_001817_040--Hb_004007_140 Hb_001516_010 Hb_001516_010 Hb_051663_010--Hb_001516_010 Hb_000000_390 Hb_000000_390 Hb_051663_010--Hb_000000_390 Hb_111985_100 Hb_111985_100 Hb_051663_010--Hb_111985_100 Hb_000922_200 Hb_000922_200 Hb_051663_010--Hb_000922_200 Hb_032920_020 Hb_032920_020 Hb_051663_010--Hb_032920_020 Hb_009486_050 Hb_009486_050 Hb_051663_010--Hb_009486_050 Hb_000748_120--Hb_051663_010 Hb_000748_120--Hb_041692_010 Hb_005976_110 Hb_005976_110 Hb_000748_120--Hb_005976_110 Hb_007617_010 Hb_007617_010 Hb_000748_120--Hb_007617_010 Hb_001439_080 Hb_001439_080 Hb_000017_200--Hb_001439_080 Hb_000017_200--Hb_007617_010 Hb_000017_200--Hb_051663_010 Hb_168918_010 Hb_168918_010 Hb_000017_200--Hb_168918_010 Hb_000017_200--Hb_000922_200 Hb_001080_190 Hb_001080_190 Hb_000017_200--Hb_001080_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0187406 0.381134 9.41166 8.22943 0.0167612 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.854045 0.736759 6.18889

CAGE analysis