Hb_000879_170

Information

Type transcription factor
Description TF Family: LIM
Location Contig879: 213147-214868
Sequence    

Annotation

kegg
ID rcu:RCOM_1587310
description Pollen-specific protein SF3, putative
nr
ID XP_012068211.1
description PREDICTED: LIM domain-containing protein WLIM1-like isoform X1 [Jatropha curcas]
swissprot
ID Q94JX5
description LIM domain-containing protein WLIM1 OS=Arabidopsis thaliana GN=WLIM1 PE=1 SV=1
trembl
ID A0A067KZK1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16019 PE=4 SV=1
Gene Ontology
ID GO:0005886
description pollen-specific protein sf3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61353: 213188-214974
cDNA
(Sanger)
(ID:Location)		 029_I05.ab1: 213448-214878 , 050_P16.ab1: 213381-214942

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000879_170 0.0 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM1-like isoform X1 [Jatropha curcas]
2 Hb_000853_180 0.1265915053 - - kinesin heavy chain, putative [Ricinus communis]
3 Hb_001227_070 0.1396862038 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9 [Jatropha curcas]
4 Hb_028487_060 0.1471672991 - - PREDICTED: 21 kDa protein-like [Jatropha curcas]
5 Hb_000856_400 0.1565883781 - - PREDICTED: protein IQ-DOMAIN 31-like [Jatropha curcas]
6 Hb_000012_330 0.1614135473 - - pollen specific protein sf21, putative [Ricinus communis]
7 Hb_001357_050 0.1672810585 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12-like [Jatropha curcas]
8 Hb_000932_050 0.1680646007 - - annexin [Manihot esculenta]
9 Hb_015941_010 0.1729083182 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
10 Hb_001729_030 0.1730587296 - - hypothetical protein VITISV_044457 [Vitis vinifera]
11 Hb_007625_010 0.1739114525 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000270_100 0.1748748729 - - ATPase 4, plasma membrane-type -like protein [Gossypium arboreum]
13 Hb_000922_400 0.1751090321 - - PREDICTED: uncharacterized protein LOC105640363 [Jatropha curcas]
14 Hb_010810_060 0.1773925406 - - sterol desaturase, putative [Ricinus communis]
15 Hb_004117_090 0.1781573345 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 70 [Jatropha curcas]
16 Hb_064546_010 0.1795784784 - - PREDICTED: peroxidase 3 [Jatropha curcas]
17 Hb_019516_070 0.1795827222 - - PREDICTED: uncharacterized protein LOC105634258 [Jatropha curcas]
18 Hb_003835_080 0.1815020231 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X2 [Jatropha curcas]
19 Hb_000622_050 0.1822301325 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001775_080 0.1835923837 - - fructose-bisphosphate aldolase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000879_170 Hb_000879_170 Hb_000853_180 Hb_000853_180 Hb_000879_170--Hb_000853_180 Hb_001227_070 Hb_001227_070 Hb_000879_170--Hb_001227_070 Hb_028487_060 Hb_028487_060 Hb_000879_170--Hb_028487_060 Hb_000856_400 Hb_000856_400 Hb_000879_170--Hb_000856_400 Hb_000012_330 Hb_000012_330 Hb_000879_170--Hb_000012_330 Hb_001357_050 Hb_001357_050 Hb_000879_170--Hb_001357_050 Hb_000853_180--Hb_000856_400 Hb_015941_010 Hb_015941_010 Hb_000853_180--Hb_015941_010 Hb_005144_120 Hb_005144_120 Hb_000853_180--Hb_005144_120 Hb_000291_290 Hb_000291_290 Hb_000853_180--Hb_000291_290 Hb_017439_010 Hb_017439_010 Hb_000853_180--Hb_017439_010 Hb_119044_010 Hb_119044_010 Hb_001227_070--Hb_119044_010 Hb_000748_120 Hb_000748_120 Hb_001227_070--Hb_000748_120 Hb_001544_050 Hb_001544_050 Hb_001227_070--Hb_001544_050 Hb_001180_010 Hb_001180_010 Hb_001227_070--Hb_001180_010 Hb_147378_010 Hb_147378_010 Hb_001227_070--Hb_147378_010 Hb_002267_060 Hb_002267_060 Hb_028487_060--Hb_002267_060 Hb_000321_170 Hb_000321_170 Hb_028487_060--Hb_000321_170 Hb_033720_030 Hb_033720_030 Hb_028487_060--Hb_033720_030 Hb_000261_070 Hb_000261_070 Hb_028487_060--Hb_000261_070 Hb_000342_040 Hb_000342_040 Hb_028487_060--Hb_000342_040 Hb_005496_040 Hb_005496_040 Hb_028487_060--Hb_005496_040 Hb_000932_050 Hb_000932_050 Hb_000856_400--Hb_000932_050 Hb_001195_130 Hb_001195_130 Hb_000856_400--Hb_001195_130 Hb_001450_040 Hb_001450_040 Hb_000856_400--Hb_001450_040 Hb_000193_210 Hb_000193_210 Hb_000856_400--Hb_000193_210 Hb_001579_300 Hb_001579_300 Hb_000856_400--Hb_001579_300 Hb_000622_050 Hb_000622_050 Hb_000012_330--Hb_000622_050 Hb_012098_160 Hb_012098_160 Hb_000012_330--Hb_012098_160 Hb_003835_080 Hb_003835_080 Hb_000012_330--Hb_003835_080 Hb_012484_050 Hb_012484_050 Hb_000012_330--Hb_012484_050 Hb_005725_240 Hb_005725_240 Hb_000012_330--Hb_005725_240 Hb_001486_280 Hb_001486_280 Hb_000012_330--Hb_001486_280 Hb_004218_200 Hb_004218_200 Hb_001357_050--Hb_004218_200 Hb_064546_010 Hb_064546_010 Hb_001357_050--Hb_064546_010 Hb_000417_050 Hb_000417_050 Hb_001357_050--Hb_000417_050 Hb_003580_050 Hb_003580_050 Hb_001357_050--Hb_003580_050 Hb_004696_010 Hb_004696_010 Hb_001357_050--Hb_004696_010 Hb_001357_050--Hb_000012_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.58162 1.86519 23.8113 37.4245 0.839892 0.14738
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.05085 1.2309 0.311432 1.1109 25.2603

CAGE analysis