Hb_001017_130

Information

Type -
Description -
Location Contig1017: 173080-174195
Sequence    

Annotation

kegg
ID pop:POPTR_0010s06070g
description POPTRDRAFT_880096; hypothetical protein
nr
ID XP_002314580.2
description hypothetical protein POPTR_0010s06070g [Populus trichocarpa]
swissprot
ID P90648
description Myosin heavy chain kinase B OS=Dictyostelium discoideum GN=mhkB PE=2 SV=1
trembl
ID B9HTP7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s06070g PE=4 SV=2
Gene Ontology
ID GO:0005886
description wd repeat-containing protein 48 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001017_130 0.0 - - hypothetical protein POPTR_0010s06070g [Populus trichocarpa]
2 Hb_001180_010 0.1164108325 - - PREDICTED: glucan endo-1,3-beta-glucosidase 9 [Jatropha curcas]
3 Hb_001544_050 0.1211915238 - - PREDICTED: U-box domain-containing protein 11-like [Jatropha curcas]
4 Hb_000388_080 0.1284797127 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
5 Hb_002701_070 0.1296395376 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
6 Hb_001433_150 0.1298931826 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004994_330 0.1307759271 - - DNA binding protein, putative [Ricinus communis]
8 Hb_000390_210 0.1319904798 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
9 Hb_002662_110 0.1320272471 - - Kinesin heavy chain, putative [Ricinus communis]
10 Hb_002542_060 0.1339780498 - - PREDICTED: wee1-like protein kinase [Jatropha curcas]
11 Hb_000958_120 0.1343615205 - - PREDICTED: uncharacterized protein LOC105646385 [Jatropha curcas]
12 Hb_000099_170 0.1373348308 - - PREDICTED: uncharacterized protein LOC105645733 [Jatropha curcas]
13 Hb_034579_020 0.1387317425 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000996_080 0.139677773 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
15 Hb_000227_400 0.1434082223 - - lipoxygenase, putative [Ricinus communis]
16 Hb_000322_030 0.1435709197 - - PREDICTED: uncharacterized protein LOC105637911 [Jatropha curcas]
17 Hb_000357_070 0.1459518677 - - -
18 Hb_002028_110 0.146045487 - - PREDICTED: F-box only protein 13 [Jatropha curcas]
19 Hb_001153_100 0.1513849376 transcription factor TF Family: HB PREDICTED: homeobox protein HD1 [Jatropha curcas]
20 Hb_000076_250 0.1516258575 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001017_130 Hb_001017_130 Hb_001180_010 Hb_001180_010 Hb_001017_130--Hb_001180_010 Hb_001544_050 Hb_001544_050 Hb_001017_130--Hb_001544_050 Hb_000388_080 Hb_000388_080 Hb_001017_130--Hb_000388_080 Hb_002701_070 Hb_002701_070 Hb_001017_130--Hb_002701_070 Hb_001433_150 Hb_001433_150 Hb_001017_130--Hb_001433_150 Hb_004994_330 Hb_004994_330 Hb_001017_130--Hb_004994_330 Hb_001180_010--Hb_001544_050 Hb_000076_030 Hb_000076_030 Hb_001180_010--Hb_000076_030 Hb_001180_010--Hb_004994_330 Hb_048476_140 Hb_048476_140 Hb_001180_010--Hb_048476_140 Hb_000465_410 Hb_000465_410 Hb_001180_010--Hb_000465_410 Hb_001180_010--Hb_002701_070 Hb_000390_210 Hb_000390_210 Hb_001544_050--Hb_000390_210 Hb_001544_050--Hb_000465_410 Hb_001544_050--Hb_002701_070 Hb_000749_260 Hb_000749_260 Hb_001544_050--Hb_000749_260 Hb_001544_050--Hb_004994_330 Hb_000076_250 Hb_000076_250 Hb_000388_080--Hb_000076_250 Hb_000357_070 Hb_000357_070 Hb_000388_080--Hb_000357_070 Hb_002028_110 Hb_002028_110 Hb_000388_080--Hb_002028_110 Hb_000322_030 Hb_000322_030 Hb_000388_080--Hb_000322_030 Hb_000388_080--Hb_004994_330 Hb_001579_300 Hb_001579_300 Hb_000388_080--Hb_001579_300 Hb_002701_070--Hb_000465_410 Hb_000958_120 Hb_000958_120 Hb_002701_070--Hb_000958_120 Hb_000996_080 Hb_000996_080 Hb_002701_070--Hb_000996_080 Hb_010868_040 Hb_010868_040 Hb_002701_070--Hb_010868_040 Hb_001433_150--Hb_001180_010 Hb_001433_150--Hb_002028_110 Hb_001153_100 Hb_001153_100 Hb_001433_150--Hb_001153_100 Hb_002641_120 Hb_002641_120 Hb_001433_150--Hb_002641_120 Hb_001433_150--Hb_001544_050 Hb_002759_220 Hb_002759_220 Hb_001433_150--Hb_002759_220 Hb_002662_110 Hb_002662_110 Hb_004994_330--Hb_002662_110 Hb_004994_330--Hb_000465_410 Hb_000417_050 Hb_000417_050 Hb_004994_330--Hb_000417_050 Hb_000207_350 Hb_000207_350 Hb_004994_330--Hb_000207_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.246816 0.193527 1.16341 0.913118 0.037569 0.0414011
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0885581 0.0348287 0.129076 0.15369 1.0766

CAGE analysis