Hb_004291_030

Information

Type -
Description -
Location Contig4291: 108315-109922
Sequence    

Annotation

kegg
ID rcu:RCOM_1049660
description multidrug resistance pump, putative
nr
ID XP_012076879.1
description PREDICTED: MATE efflux family protein 9-like [Jatropha curcas]
swissprot
ID Q5I0E9
description Multidrug and toxin extrusion protein 1 OS=Rattus norvegicus GN=Slc47a1 PE=1 SV=1
trembl
ID A0A067KFP8
description MATE efflux family protein OS=Jatropha curcas GN=JCGZ_07374 PE=3 SV=1
Gene Ontology
ID GO:0016021
description mate efflux family protein 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004291_030 0.0 - - PREDICTED: MATE efflux family protein 9-like [Jatropha curcas]
2 Hb_000482_180 0.0957177873 - - PREDICTED: glycine dehydrogenase (decarboxylating), mitochondrial [Jatropha curcas]
3 Hb_011537_130 0.0980776239 - - unnamed protein product [Vitis vinifera]
4 Hb_048755_030 0.0989670825 - - Periplasmic beta-glucosidase precursor, putative [Ricinus communis]
5 Hb_020367_040 0.1004925258 - - hypothetical protein JCGZ_01061 [Jatropha curcas]
6 Hb_005675_030 0.10369168 - - PREDICTED: 3-ketoacyl-CoA synthase 6 [Jatropha curcas]
7 Hb_002701_250 0.1063417753 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
8 Hb_002226_090 0.1093639332 - - Stachyose synthase precursor, putative [Ricinus communis]
9 Hb_002534_090 0.1103770444 - - geranylgeranyl reductase [Hevea brasiliensis]
10 Hb_002289_070 0.1120124607 - - PREDICTED: magnesium-chelatase subunit ChlH, chloroplastic [Jatropha curcas]
11 Hb_001488_160 0.1165228525 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
12 Hb_001699_110 0.1167220535 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
13 Hb_057880_020 0.1182185406 - - PREDICTED: receptor-like protein kinase HSL1, partial [Jatropha curcas]
14 Hb_000826_010 0.1185021353 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005111_040 0.118931006 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
16 Hb_002413_050 0.12080519 - - hypothetical protein POPTR_0018s06150g [Populus trichocarpa]
17 Hb_000389_170 0.120919342 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
18 Hb_002044_070 0.1228015282 - - Chlorophyll a-b binding protein 3, chloroplastic [Theobroma cacao]
19 Hb_007904_110 0.1232074599 - - PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Populus euphratica]
20 Hb_000139_030 0.1245862658 - - PREDICTED: uncharacterized protein LOC101254423 [Solanum lycopersicum]

Gene co-expression network

sample Hb_004291_030 Hb_004291_030 Hb_000482_180 Hb_000482_180 Hb_004291_030--Hb_000482_180 Hb_011537_130 Hb_011537_130 Hb_004291_030--Hb_011537_130 Hb_048755_030 Hb_048755_030 Hb_004291_030--Hb_048755_030 Hb_020367_040 Hb_020367_040 Hb_004291_030--Hb_020367_040 Hb_005675_030 Hb_005675_030 Hb_004291_030--Hb_005675_030 Hb_002701_250 Hb_002701_250 Hb_004291_030--Hb_002701_250 Hb_005111_040 Hb_005111_040 Hb_000482_180--Hb_005111_040 Hb_000482_180--Hb_048755_030 Hb_000482_180--Hb_002701_250 Hb_007904_110 Hb_007904_110 Hb_000482_180--Hb_007904_110 Hb_006291_050 Hb_006291_050 Hb_000482_180--Hb_006291_050 Hb_005305_070 Hb_005305_070 Hb_000482_180--Hb_005305_070 Hb_011537_130--Hb_005675_030 Hb_018202_040 Hb_018202_040 Hb_011537_130--Hb_018202_040 Hb_002413_050 Hb_002413_050 Hb_011537_130--Hb_002413_050 Hb_002534_090 Hb_002534_090 Hb_011537_130--Hb_002534_090 Hb_169492_010 Hb_169492_010 Hb_011537_130--Hb_169492_010 Hb_002044_070 Hb_002044_070 Hb_011537_130--Hb_002044_070 Hb_048755_030--Hb_011537_130 Hb_001579_050 Hb_001579_050 Hb_048755_030--Hb_001579_050 Hb_002111_010 Hb_002111_010 Hb_048755_030--Hb_002111_010 Hb_000139_030 Hb_000139_030 Hb_048755_030--Hb_000139_030 Hb_048755_030--Hb_020367_040 Hb_002226_090 Hb_002226_090 Hb_020367_040--Hb_002226_090 Hb_057880_020 Hb_057880_020 Hb_020367_040--Hb_057880_020 Hb_020367_040--Hb_002701_250 Hb_020367_040--Hb_007904_110 Hb_000081_110 Hb_000081_110 Hb_020367_040--Hb_000081_110 Hb_000389_170 Hb_000389_170 Hb_020367_040--Hb_000389_170 Hb_001488_160 Hb_001488_160 Hb_005675_030--Hb_001488_160 Hb_005675_030--Hb_018202_040 Hb_080048_030 Hb_080048_030 Hb_005675_030--Hb_080048_030 Hb_018487_040 Hb_018487_040 Hb_005675_030--Hb_018487_040 Hb_005675_030--Hb_169492_010 Hb_000826_010 Hb_000826_010 Hb_002701_250--Hb_000826_010 Hb_002289_070 Hb_002289_070 Hb_002701_250--Hb_002289_070 Hb_000373_160 Hb_000373_160 Hb_002701_250--Hb_000373_160 Hb_000098_040 Hb_000098_040 Hb_002701_250--Hb_000098_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.178357 0.503202 0.553968 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0427368 0.0542894 2.23715

CAGE analysis