Hb_041813_080

Information

Type -
Description -
Location Contig41813: 33740-34018
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_041813_080 0.0 - - -
2 Hb_002073_110 0.1957570357 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000245_120 0.2153627053 - - hypothetical protein POPTR_0001s18890g [Populus trichocarpa]
4 Hb_143769_010 0.2335897934 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase MRH1 [Jatropha curcas]
5 Hb_002534_010 0.2603116354 - - PREDICTED: expansin-A1-like [Jatropha curcas]
6 Hb_118034_010 0.2682274521 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump [Jatropha curcas]
7 Hb_005742_010 0.2766801195 - - hypothetical protein, partial [Pseudomonas fluorescens]
8 Hb_142570_010 0.2776628429 - - PREDICTED: uncharacterized protein LOC104907573 [Beta vulgaris subsp. vulgaris]
9 Hb_159308_020 0.2814677189 - - hypothetical protein B456_002G027900 [Gossypium raimondii]
10 Hb_000001_100 0.2822748168 - - -
11 Hb_004218_300 0.2843853215 - - hypothetical protein JCGZ_24534 [Jatropha curcas]
12 Hb_001300_250 0.2876779742 - - hypothetical protein JCGZ_22020 [Jatropha curcas]
13 Hb_171685_030 0.2878349527 - - URF-1 [Citrullus lanatus]
14 Hb_003197_010 0.2887978287 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003073_090 0.2940348939 transcription factor TF Family: B3 hypothetical protein POPTR_0004s23920g [Populus trichocarpa]
16 Hb_063866_010 0.3007791426 - - PREDICTED: uncharacterized protein LOC105632605 [Jatropha curcas]
17 Hb_002473_140 0.3036327047 - - -
18 Hb_088410_010 0.3078381264 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
19 Hb_041813_050 0.3079256639 - - hypothetical protein NitaMp096 [Nicotiana tabacum]
20 Hb_000077_360 0.3091339798 - - sugar transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_041813_080 Hb_041813_080 Hb_002073_110 Hb_002073_110 Hb_041813_080--Hb_002073_110 Hb_000245_120 Hb_000245_120 Hb_041813_080--Hb_000245_120 Hb_143769_010 Hb_143769_010 Hb_041813_080--Hb_143769_010 Hb_002534_010 Hb_002534_010 Hb_041813_080--Hb_002534_010 Hb_118034_010 Hb_118034_010 Hb_041813_080--Hb_118034_010 Hb_005742_010 Hb_005742_010 Hb_041813_080--Hb_005742_010 Hb_002073_110--Hb_002534_010 Hb_004218_300 Hb_004218_300 Hb_002073_110--Hb_004218_300 Hb_063866_010 Hb_063866_010 Hb_002073_110--Hb_063866_010 Hb_005228_060 Hb_005228_060 Hb_002073_110--Hb_005228_060 Hb_004291_030 Hb_004291_030 Hb_002073_110--Hb_004291_030 Hb_000245_120--Hb_005742_010 Hb_000245_120--Hb_002073_110 Hb_006040_050 Hb_006040_050 Hb_000245_120--Hb_006040_050 Hb_027010_030 Hb_027010_030 Hb_000245_120--Hb_027010_030 Hb_000245_120--Hb_143769_010 Hb_012463_010 Hb_012463_010 Hb_143769_010--Hb_012463_010 Hb_011478_010 Hb_011478_010 Hb_143769_010--Hb_011478_010 Hb_027760_030 Hb_027760_030 Hb_143769_010--Hb_027760_030 Hb_020763_010 Hb_020763_010 Hb_143769_010--Hb_020763_010 Hb_002025_070 Hb_002025_070 Hb_002534_010--Hb_002025_070 Hb_002759_050 Hb_002759_050 Hb_002534_010--Hb_002759_050 Hb_029879_150 Hb_029879_150 Hb_002534_010--Hb_029879_150 Hb_002073_130 Hb_002073_130 Hb_002534_010--Hb_002073_130 Hb_000477_090 Hb_000477_090 Hb_002534_010--Hb_000477_090 Hb_022973_010 Hb_022973_010 Hb_118034_010--Hb_022973_010 Hb_025623_010 Hb_025623_010 Hb_118034_010--Hb_025623_010 Hb_002370_020 Hb_002370_020 Hb_118034_010--Hb_002370_020 Hb_027472_190 Hb_027472_190 Hb_118034_010--Hb_027472_190 Hb_000300_650 Hb_000300_650 Hb_118034_010--Hb_000300_650 Hb_011501_020 Hb_011501_020 Hb_118034_010--Hb_011501_020 Hb_005742_010--Hb_006040_050 Hb_171685_040 Hb_171685_040 Hb_005742_010--Hb_171685_040 Hb_171685_030 Hb_171685_030 Hb_005742_010--Hb_171685_030 Hb_002482_050 Hb_002482_050 Hb_005742_010--Hb_002482_050 Hb_062192_060 Hb_062192_060 Hb_005742_010--Hb_062192_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.185498 0.823274 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.976648 0.333602 2.639

CAGE analysis