Hb_027760_030

Information

Type -
Description -
Location Contig27760: 24961-25574
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28987: 11160-25555 , PASA_asmbl_28988: 23836-25527
cDNA
(Sanger)
(ID:Location)		 038_C22.ab1: 12245-25555

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027760_030 0.0 - - -
2 Hb_000656_330 0.2351646676 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
3 Hb_000381_010 0.2425385264 - - PREDICTED: arogenate dehydratase/prephenate dehydratase 1, chloroplastic-like [Jatropha curcas]
4 Hb_003030_030 0.2579651238 - - -
5 Hb_181026_010 0.2586742615 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
6 Hb_001008_180 0.2691102041 - - -
7 Hb_001142_010 0.2710819979 - - PREDICTED: alcohol dehydrogenase-like 6 [Jatropha curcas]
8 Hb_036988_010 0.2727549218 - - hypothetical protein JCGZ_25496 [Jatropha curcas]
9 Hb_000786_030 0.2768914448 - - PREDICTED: uncharacterized protein LOC104240691 [Nicotiana sylvestris]
10 Hb_024991_010 0.2799046615 - - hypothetical protein B456_007G217100 [Gossypium raimondii]
11 Hb_143769_010 0.2858438425 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase MRH1 [Jatropha curcas]
12 Hb_174473_010 0.2863437057 - - PREDICTED: uncharacterized protein LOC105775505 [Gossypium raimondii]
13 Hb_002085_100 0.2886944409 - - PREDICTED: syntaxin-72 isoform X1 [Jatropha curcas]
14 Hb_000390_030 0.2890366874 - - hypothetical protein ZEAMMB73_364791 [Zea mays]
15 Hb_015978_110 0.2892991391 - - PREDICTED: pentatricopeptide repeat-containing protein At3g62470, mitochondrial-like [Jatropha curcas]
16 Hb_000950_010 0.2897612904 - - PREDICTED: S-formylglutathione hydrolase [Jatropha curcas]
17 Hb_088327_010 0.2921694594 - - PREDICTED: serine hydroxymethyltransferase 7 [Jatropha curcas]
18 Hb_066487_010 0.2935121217 - - conserved hypothetical protein [Ricinus communis]
19 Hb_146834_010 0.2935813836 - - Uncharacterized protein TCM_035385 [Theobroma cacao]
20 Hb_001006_220 0.2942044956 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 [Jatropha curcas]

Gene co-expression network

sample Hb_027760_030 Hb_027760_030 Hb_000656_330 Hb_000656_330 Hb_027760_030--Hb_000656_330 Hb_000381_010 Hb_000381_010 Hb_027760_030--Hb_000381_010 Hb_003030_030 Hb_003030_030 Hb_027760_030--Hb_003030_030 Hb_181026_010 Hb_181026_010 Hb_027760_030--Hb_181026_010 Hb_001008_180 Hb_001008_180 Hb_027760_030--Hb_001008_180 Hb_001142_010 Hb_001142_010 Hb_027760_030--Hb_001142_010 Hb_000656_330--Hb_000381_010 Hb_009252_010 Hb_009252_010 Hb_000656_330--Hb_009252_010 Hb_021495_020 Hb_021495_020 Hb_000656_330--Hb_021495_020 Hb_015978_110 Hb_015978_110 Hb_000656_330--Hb_015978_110 Hb_009674_050 Hb_009674_050 Hb_000656_330--Hb_009674_050 Hb_005348_110 Hb_005348_110 Hb_000656_330--Hb_005348_110 Hb_000381_010--Hb_001142_010 Hb_000946_110 Hb_000946_110 Hb_000381_010--Hb_000946_110 Hb_015675_030 Hb_015675_030 Hb_000381_010--Hb_015675_030 Hb_000106_030 Hb_000106_030 Hb_000381_010--Hb_000106_030 Hb_010288_060 Hb_010288_060 Hb_000381_010--Hb_010288_060 Hb_000656_090 Hb_000656_090 Hb_003030_030--Hb_000656_090 Hb_003141_070 Hb_003141_070 Hb_003030_030--Hb_003141_070 Hb_004445_020 Hb_004445_020 Hb_003030_030--Hb_004445_020 Hb_000105_120 Hb_000105_120 Hb_003030_030--Hb_000105_120 Hb_003030_030--Hb_015978_110 Hb_003606_060 Hb_003606_060 Hb_003030_030--Hb_003606_060 Hb_000460_070 Hb_000460_070 Hb_181026_010--Hb_000460_070 Hb_006816_470 Hb_006816_470 Hb_181026_010--Hb_006816_470 Hb_011386_020 Hb_011386_020 Hb_181026_010--Hb_011386_020 Hb_005167_020 Hb_005167_020 Hb_181026_010--Hb_005167_020 Hb_004650_060 Hb_004650_060 Hb_181026_010--Hb_004650_060 Hb_004339_030 Hb_004339_030 Hb_181026_010--Hb_004339_030 Hb_000327_160 Hb_000327_160 Hb_001008_180--Hb_000327_160 Hb_000950_010 Hb_000950_010 Hb_001008_180--Hb_000950_010 Hb_002748_030 Hb_002748_030 Hb_001008_180--Hb_002748_030 Hb_001008_180--Hb_006816_470 Hb_008159_010 Hb_008159_010 Hb_001008_180--Hb_008159_010 Hb_002748_020 Hb_002748_020 Hb_001008_180--Hb_002748_020 Hb_001142_010--Hb_015675_030 Hb_001953_080 Hb_001953_080 Hb_001142_010--Hb_001953_080 Hb_001142_010--Hb_000106_030 Hb_001142_010--Hb_010288_060 Hb_001142_010--Hb_000946_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.840004 0 0 4.08722 0.290321 3.06284
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.626185 0.49684 4.42478 2.33174 6.7676

CAGE analysis