Hb_027010_030

Information

Type -
Description -
Location Contig27010: 29047-33749
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa015000mg
description hypothetical protein
nr
ID XP_007200265.1
description hypothetical protein PRUPE_ppa015000mg [Prunus persica]
swissprot
ID P0CT40
description Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1
trembl
ID M5VK25
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015000mg PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027010_030 0.0 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
2 Hb_032718_010 0.1956116972 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
3 Hb_041813_010 0.2085801168 - - conserved hypothetical protein [Ricinus communis]
4 Hb_026698_030 0.2399405956 - - hypothetical protein CISIN_1g030953mg [Citrus sinensis]
5 Hb_053079_010 0.2492898301 - - polyprotein [Citrus endogenous pararetrovirus]
6 Hb_067345_020 0.2516710571 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
7 Hb_017098_060 0.2640660185 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Pyrus x bretschneideri]
8 Hb_000454_160 0.2657594487 - - amidophosphoribosyltransferase, putative [Ricinus communis]
9 Hb_000245_120 0.2666733874 - - hypothetical protein POPTR_0001s18890g [Populus trichocarpa]
10 Hb_000076_050 0.2714279317 - - PREDICTED: uncharacterized protein LOC105155919 [Sesamum indicum]
11 Hb_007237_010 0.2759092593 - - conserved hypothetical protein [Ricinus communis]
12 Hb_011287_070 0.2764137313 - - -
13 Hb_007520_070 0.2768445589 - - PREDICTED: uncharacterized protein LOC105155919 [Sesamum indicum]
14 Hb_013080_010 0.2785930682 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
15 Hb_000327_370 0.2792067433 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
16 Hb_008033_060 0.2802660645 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]
17 Hb_008803_040 0.2818021595 - - PREDICTED: uncharacterized protein LOC105157106 [Sesamum indicum]
18 Hb_004218_300 0.2840936176 - - hypothetical protein JCGZ_24534 [Jatropha curcas]
19 Hb_002073_110 0.2860399298 - - conserved hypothetical protein [Ricinus communis]
20 Hb_063866_010 0.2903697628 - - PREDICTED: uncharacterized protein LOC105632605 [Jatropha curcas]

Gene co-expression network

sample Hb_027010_030 Hb_027010_030 Hb_032718_010 Hb_032718_010 Hb_027010_030--Hb_032718_010 Hb_041813_010 Hb_041813_010 Hb_027010_030--Hb_041813_010 Hb_026698_030 Hb_026698_030 Hb_027010_030--Hb_026698_030 Hb_053079_010 Hb_053079_010 Hb_027010_030--Hb_053079_010 Hb_067345_020 Hb_067345_020 Hb_027010_030--Hb_067345_020 Hb_017098_060 Hb_017098_060 Hb_027010_030--Hb_017098_060 Hb_032718_010--Hb_026698_030 Hb_007237_010 Hb_007237_010 Hb_032718_010--Hb_007237_010 Hb_004846_150 Hb_004846_150 Hb_032718_010--Hb_004846_150 Hb_034507_010 Hb_034507_010 Hb_032718_010--Hb_034507_010 Hb_000890_180 Hb_000890_180 Hb_032718_010--Hb_000890_180 Hb_041813_050 Hb_041813_050 Hb_041813_010--Hb_041813_050 Hb_102602_020 Hb_102602_020 Hb_041813_010--Hb_102602_020 Hb_000076_050 Hb_000076_050 Hb_041813_010--Hb_000076_050 Hb_007520_070 Hb_007520_070 Hb_041813_010--Hb_007520_070 Hb_000454_160 Hb_000454_160 Hb_041813_010--Hb_000454_160 Hb_008803_040 Hb_008803_040 Hb_026698_030--Hb_008803_040 Hb_002943_010 Hb_002943_010 Hb_026698_030--Hb_002943_010 Hb_008226_030 Hb_008226_030 Hb_026698_030--Hb_008226_030 Hb_000404_040 Hb_000404_040 Hb_026698_030--Hb_000404_040 Hb_004574_040 Hb_004574_040 Hb_026698_030--Hb_004574_040 Hb_013080_010 Hb_013080_010 Hb_053079_010--Hb_013080_010 Hb_024411_010 Hb_024411_010 Hb_053079_010--Hb_024411_010 Hb_006040_050 Hb_006040_050 Hb_053079_010--Hb_006040_050 Hb_005466_010 Hb_005466_010 Hb_053079_010--Hb_005466_010 Hb_151320_010 Hb_151320_010 Hb_053079_010--Hb_151320_010 Hb_000417_150 Hb_000417_150 Hb_067345_020--Hb_000417_150 Hb_028872_100 Hb_028872_100 Hb_067345_020--Hb_028872_100 Hb_026053_030 Hb_026053_030 Hb_067345_020--Hb_026053_030 Hb_048476_070 Hb_048476_070 Hb_067345_020--Hb_048476_070 Hb_005470_040 Hb_005470_040 Hb_067345_020--Hb_005470_040 Hb_000685_140 Hb_000685_140 Hb_067345_020--Hb_000685_140 Hb_000856_320 Hb_000856_320 Hb_017098_060--Hb_000856_320 Hb_000165_100 Hb_000165_100 Hb_017098_060--Hb_000165_100 Hb_029584_160 Hb_029584_160 Hb_017098_060--Hb_029584_160 Hb_026314_030 Hb_026314_030 Hb_017098_060--Hb_026314_030 Hb_005305_010 Hb_005305_010 Hb_017098_060--Hb_005305_010 Hb_004218_300 Hb_004218_300 Hb_017098_060--Hb_004218_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0152206 0.0032582 0.00947164 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0151062 0.00622282 0.0337133

CAGE analysis